R语言 cosmo包 constraintSet-class()函数中文帮助文档(中英文对照)

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constraintSet-class(cosmo)
constraintSet-class()所属R语言包：cosmo

                                        Class "constraintSet" ~~~
                                         类“constraintSet”~~~

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

An object of class "constraintSet" regroups all the constraints one wishes to impose when performing detection. The object consits essentially of constraints on the motif broken down into
一个对象的类"constraintSet"重新组合所有的制约因素之一意愿强加执行检测时。对象consits约束本质上分解成主题


类的对象----------Objects from the Class----------

Objects can be created by calls of the form    new('constraintSet',<br>     description      = ...., # Object of class \code{"character"}<br>     numIntervals     = ...., # Object of class \code{"numeric"}<br>     intervals        = ...., # Object of class \code{"list"}<br>     shapeDiffCon     = ...., # Object of class \code{"data.frame"}<br>     subMotifCon      = ...., # Object of class \code{"data.frame"}<br>     palCon   = ...., # Object of class \code{"data.frame"}<br>     objectCall       = ...., # Object of class \code{"call"}<br>   )
可以创建对象调用的形式  new('constraintSet',参考    description      = ...., # Object of class \code{"character"}参考    numIntervals     = ...., # Object of class \code{"numeric"}参考    intervals        = ...., # Object of class \code{"list"}参考    shapeDiffCon     = ...., # Object of class \code{"data.frame"}参考     subMotifCon      = ...., # Object of class \code{"data.frame"}参考    palCon   = ...., # Object of class \code{"data.frame"}参考    objectCall       = ...., # Object of class \code{"call"}参考  )


插槽----------Slots----------




description: Object of class "character" a general description of the constraint set
description：对象类的"character"的约束集的一般性描述




numIntervals: Object of class "numeric" number of intervals the motif was split into
numIntervals：对象类"numeric"间隔数序分成




intervals: Object of class "list" a list of objects of class "intInfo" each describing the constraints
intervals：类"list"的对象列表对象的类"intInfo"每个描述的限制




shapeDiffCon: Object of class "data.frame" a data frame summarizing the global constraints of the shape constraints. The data frame has four columns: the first two columns are the intervals and the extremity subject to the constraint, the extremity being supplied as 'a' for beginning, and 'b' for end. The third and fourth column are respectively the lower and upper bounds on the difference between the interval extremities considered. For example, if c("1b","2a",-0.2,0.5) were a row in the data frame, it would indicate that the difference in the information content between the end of the first interval and the beginning of the
shapeDiffCon：Object类的"data.frame"总结的形状约束的全局约束的数据框。数据框有四列：前两列的间隔和受约束的肢体，肢体提供开始，和B为结束。第三和第四列分别考虑的间隔四肢之间的差异的上限和下限。例如，如果C（“1B”，“2A”，-0.2,0.5）是在数据框的行，这将表明，第一区间的结束和开始之间的差异，在信息内容“




subMotifCon: Object of class "data.frame" a data frame specifying the submotif global constraints. The two columns respectiuvely indicate the submotif of interest and it's error tolerance. The error is computed as the difference in terms      
subMotifCon：Object类的"data.frame"数据框指定的submotif的全局约束。两列respectiuvely表示兴趣submotif，它的错误宽容。错误计算方面的差异




palCon: Object of class "data.frame" a data frame summarizing the palindromic constraints imposed on the motif: the first two columns indicate the two palindromic intervals and the third is the error tolerated between the
palCon：对象类的"data.frame"一个数据框总结回文上的图案的制约：前两列表示两个回文的时间间隔和第三之间的容忍错误




objectCall: Object of class "call" stores how
objectCall类"call"商店对象如何


方法----------Methods----------




plot signature(x = "constraintSet", varLen=4,       propLen=4, plot.IC=TRUE, plot.nucFreq=TRUE): Plots the "constraintSet" object. varLen and propLen are integers indicating how wide to make the variable and proportion intervals (1 unit is one base pair).     plot.IC and plot.nucFreq are logicals respectively indicating whether the IC content and the nucleotide frequencies are to be
图signature(x = "constraintSet", varLen=4,       propLen=4, plot.IC=TRUE, plot.nucFreq=TRUE)：绘制"constraintSet"对象。 varLen和propLen整数表示有多宽，使变量和比例的时间间隔（1个单位是一个碱基对）。 plot.IC和plot.nucFreq是逻辑值分别表示是否在IC内容和核苷酸频率是




print signature(x = "constraintSet",...) Prints the
打印signature(x = "constraintSet",...)打印




show signature(object = "constraintSet") Prints the
显示signature(object = "constraintSet")打印


作者（S）----------Author(s)----------



Fabian Gallusser, <a href="mailto:fgallusser@berkeley.edu">fgallusser@berkeley.edu</a>




参见----------See Also----------

writeConFile,  constraintSet-class, intInfo-class
writeConFile，constraintSet-class，intInfo-class

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注：
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