link.map.wgaim(wgaim)
link.map.wgaim()所属R语言包：wgaim
Plot a genetic linkage map with QTL's
一个QTL的遗传连锁图的绘制
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Neatly plots the genetic linkage map with marker locations, marker names and highlights QTL's with their associated flanking markers obtained from a fit to wgaim.
整齐地绘制遗传连锁图的标记位置，标记名称和亮点QTL与他们相关联的标记获得一个合适的wgaim。
用法----------Usage----------
## S3 method for class 'wgaim'
link.map(object, intervalObj, chr, max.dist,
marker.names = "markers", list.col = list(q.col = "light blue",
m.col = "red", t.col = "light blue"), list.cex = list(t.cex = 0.6,
m.cex = 0.6), trait.labels = NULL, tick = FALSE, ...)
参数----------Arguments----------
参数：object
object of class "wgaim"
类的对象“wgaim。”
参数：intervalObj
object of class "cross" or "interval"
类的对象“cross”或“interval”
参数：chr
character string naming the subset of chromosomes to plot
字符串命名的染色体子集图
参数：max.dist
a numerical value in cM determining the distance the genetic map should be subsetted by
cM的确定的距离的遗传图中的数值应子集
参数：marker.names
a character string naming the type of marker information to plot. If "dist" then distances names plotted alongside each chromosome on the left. If "markers" then marker names are plotted instead. Defaults to "markers".
一个字符串，命名类型的标记信息绘制。如果“dist”，然后绘制距离名称沿着每一条染色体上的左边。如果“markers”标记名称，而不是被绘制。默认“markers”。
参数：list.col
named list of colours used to highlight the QTL regions and their flanking markers. q.col is the color of the QTL regions. m.col is the color the flanking markers. t.col is the color of the trait name used in the model object (see par for colour options)
使用的颜色突出的的QTL区域和他们的侧翼标记的命名列表。 q.col的QTL区域的颜色。 m.col的颜色标记。 t.col是的颜色特征模型中的对象的名称（见par颜色选项）
参数：list.cex
a named list object containing the character expansion factors for the marker names m.cex and the trait labels t.cex
一个名为list的对象，它包含的字符扩展的标记因素命名为m.cex和特质标签t.cex
参数：trait.labels
character string naming the trait used in the model object
字符串命名模型中的对象的特征
参数：tick
logical value. If TRUE then an axis with tick marks are generated for the chromosome names
逻辑值。如果TRUE然后一个轴的刻度线产生的染色体名
参数：...
arguments passed to "plot" to set up the plot region and plot any sybols if required
如果需要的参数传递给“plot”设置的图区域，并绘制任何sybols
Details
详细信息----------Details----------
This plotting procedure builds on link.map.cross by adding the QTL regions to the map and highlighting the appropriate markers obtained from a fit to wgaim. If the linkage map is subsetted and QTL regions fall outside the remaining map a warning will be given that the QTL have been omitted from the display.
这个图形程序的基础上link.map.crossQTL区域的图，并强调适当的标记获得一个合适的wgaim。如果遗传连锁图谱的子集和QTL区域外其余图将发出警告的QTL并无遗漏的显示。
The list.col arguments q.col, m.col and t.col have been added for personal colour highlighting of the QTL regions, flanking markers and trait names. For greater flexibility the procedure may also be given the usual col argument that will be passed to the other markers.
list.col参数q.col，m.col和t.col已经加入了个人色彩突出显示的QTL区域，侧翼标记和特征的名称。为了更加灵活的程序也可以给出了通常的“col参数将被传递到其他标记。
The list.cex argument can be used to manipulate the character expansion of the marker names using m.cex or the character expansion of the trait.labels using t.cex. If a "marker" analysis has been performed then pch is used to plot a symbol at the location of the QTL. This character can be changed using the usual arguments such as pch or cex that are passed through the ... argument.
可用于操纵字符扩展的标记名称使用list.cex或字符扩展的m.cex使用trait.labelst.cex参数。如果一个“标记”的分析已被执行然后pch的QTL的位置时被使用来绘制一个符号。该字符可以使用常规的参数如pch或cex会通过改变...的说法。
值----------Value----------
For an "interval" analysis, the genetic linkage map is plotted with shaded QTL regions and highlighted flanking markers. For a "marker" analysis, a symbol is placed at the QTL locations and the markers are highlighted.
对于“间隔”的分析，遗传连锁图谱的绘制阴影的QTL区域和突出标记。对于一个“标记”的分析中，一个符号被放置在QTL位置和突出显示的标记。
（作者）----------Author(s)----------
Julian Taylor
参考文献----------References----------
Bi-Parental Populations Using Linear Mixed Models. Journal of Statistical Software, 40(7), 1-18. URL http://www.jstatsoft.org/v40/i07/.
参见----------See Also----------
link.map.cross, wgaim
link.map.cross，wgaim
实例----------Examples----------
## Not run: [＃不运行：]
# fit wgaim model[适合wgaim模型]
zn.qtl <- wgaim(zn.fm, phenoData = zinc, intervalObj = raccas,
merge.by = "id", trace = "trace.txt", na.method.X = "include")
# plot QTL[图QTL]
link.map(zn.qtl, raccas, list.col = list(m.col = "red"), col = "gray")
## End(Not run)[＃（不执行）]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-10-1 21:04:17
