MIAME(Biobase)
MIAME()所属R语言包:Biobase
Class for Storing Microarray Experiment Information
类的存储芯片实验信息
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Class MIAME covers MIAME entries that are not covered by other classes in Bioconductor. Namely, experimental design, samples, hybridizations, normalization controls, and pre-processing information. The MIAME class
类MIAME占地面积MIAME,不涉及由Bioconductor其他类条目。即,实验设计,样品,杂交,规范化控制,前处理的信息。 MIAME类
插槽----------Slots----------
name: Object of class character containing the experimenter name
name:Object类的character含有实验者名称
lab: Object of class character containing the laboratory where the experiment was conducted
lab:character类的对象包含了实验室实验进行
contact: Object of class character containing contact information for lab and/or experimenter
contact类character实验室和/或实验者含联系人信息:对象
title: Object of class character containing a single-sentence experiment title
title:Object类的character包含一个单一的句子实验称号
abstract: Object of class character containing an abstract describing the experiment
abstract:类对象character包含一个抽象的描述实验
url: Object of class character containing a URL for the experiment
url类character实验包含一个URL对象
samples: Object of class list containing information about the samples
samples:类list包含的信息的对象有关样本
hybridizations: Object of class list containing information about the hybridizations
hybridizations类list含有杂交的信息:对象
normControls: Object of class list containing information about the controls such as house keeping genes
normControls类list包含有关信息如房屋的控制对象保持基因
preprocessing: Object of class list containing information about the pre-processing steps used on the raw data from this experiment
preprocessing类list包含用于从本实验的原始数据的前处理步骤的详细信息:对象
pubMedIds: Object of class character listing strings of PubMed identifiers of papers relevant to the dataset
pubMedIds类character上市期刊论文有关的标识符字符串对象的集
other: Object of class list containing other information for which none of the above slots does not applies
other类list包含其他信息的对象为上述插槽不适用
方法----------Methods----------
Constructor methods:
构造方法:
MIAME(name = "", lab = "", contact = "", title = "", abstract = "", url = "", pubMedIds = "" , samples = "", hybridizations = list(), normControls = list(), preprocessing = list(), other = list()):
MIAME(name = "", lab = "", contact = "", title = "", abstract = "", url = "", pubMedIds = "" , samples = "", hybridizations = list(), normControls = list(), preprocessing = list(), other = list()):
Class-specific methods:
类的具体方法:
abstract(MIAME): An accessor function for abstract.
abstract(MIAME):abstract的存取功能。
combine(MIAME,MIAME): Combine two objects of MIAME-class, issuing warnings when ambiguities encountered.
combine(MIAME,MIAME):MIAME-class发出警告时含糊遇到合并两个对象。
expinfo(MIAME): An accessor function for name, lab, contact, title, and url.
expinfo(MIAME):name,lab,contact,title,url存取功能。
hybridizations(MIAME): An accessor function for hybridizations.
hybridizations(MIAME):hybridizations的存取功能。
normControls(MIAME): An accessor function for normControls.
normControls(MIAME):normControls的存取功能。
notes(MIAME), notes(MIAME) <- value: Accessor functions for other. notes(MIAME) <- character
notes(MIAME), notes(MIAME) <- value:other的存取功能。 notes(MIAME) <- character
otherInfo(MIAME): An accessor function for other.
otherInfo(MIAME):other的存取功能。
preproc(MIAME): An accessor function for preprocessing.
preproc(MIAME):preprocessing的存取功能。
pubMedIds(MIAME), pubMedIds(MIAME) <- value: Accessor function for pubMedIds.
pubMedIds(MIAME), pubMedIds(MIAME) <- value:pubMedIds存取功能。
samples(MIAME): An accessor function for samples.
samples(MIAME):samples的存取功能。
Standard generic methods:
标准的通用方法:
updateObject(object, ..., verbose=FALSE) Update instance to current version, if necessary. See updateObject
updateObject(object, ..., verbose=FALSE)实例更新到当前版本,如果有必要的。看到updateObject
isCurrent(object) Determine whether version of object is current. See isCurrent
isCurrent(object)确定对象是否是最新的版本。看到isCurrent
isVersioned(object) Determine whether object contains a 'version' string describing its structure . See isVersioned
isVersioned(object)确定是否对象包含一个版本字符串,来描述它的结构。看到isVersioned
show(MIAME): Renders information about the MIAME information
show(MIAME):呈现有关MIAME信息的信息
作者(S)----------Author(s)----------
Rafael A. Irizarry
参考文献----------References----------
参见----------See Also----------
class:characterORMIAME, read.MIAME
class:characterORMIAME,read.MIAME
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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