R语言 ArrayTools包 designMatrix()函数中文帮助文档(中英文对照)

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designMatrix(ArrayTools)
designMatrix()所属R语言包：ArrayTools

                                        Class to Contain the Design Matrix that Used for Linear Regression
                                         设计矩阵，线性回归使用类来包含

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Class to Contain the Design Matrix that Used for Linear Regression
设计矩阵，线性回归使用类来包含


创建对象----------Creating Objects----------

new("designMatrix", ..., target, covariates, intIndex=0)
new("designMatrix", ..., target, covariates, intIndex=0)

This create as design matrix class.  target is a data frame that contains chip and covaraite information, or experimental phenotypes  recorded in eSet and ExpressionSet-derived classes.  covariates is a list of 1-n covariates.  If intIndex=0, the interaction effect  is not considered; otherwise, use two integers to indicate which  covariates are considered for interaction effect. For example,  if covariates <- c("estrogen","drug","time") and you are considering  the interaction between "estrogen" and "time", then you would write  intIndex=c(1,3)
此设计创建矩阵类。 target是一个数据框包含芯片和covaraite信息，或在ESET和ExpressionSet派生类中记录的实验表型。 covariates是1-N协变量的列表。如果intIndex=0，互动效应不考虑，否则，使用两个整数来表示协变量交互效应考虑的。例如，如果covariates <- c("estrogen","drug","time")和你正在考虑的“雌激素”和“时间”之间的相互作用，那么你会写intIndex=c(1,3)


插槽----------Slots----------




design: contains the design matrix
design：包含设计矩阵




target: contains the target data
target：target数据




covariates: contains the covariates
covariates：包含covariates




intIndex: contains the intIndex
intIndex：包含intIndex


方法----------Methods----------




getCovariates signature(object = "designMatrix"):
getCovariatessignature(object = "designMatrix")：




getDesign signature(object = "designMatrix"):  
getDesignsignature(object = "designMatrix")：




getIntIndex signature(object = "designMatrix"):  
getIntIndexsignature(object = "designMatrix")：




getTarget signature(object = "designMatrix"):  
getTargetsignature(object = "designMatrix")：




initialize signature(.Object = "designMatrix"):  
初始化signature(.Object = "designMatrix")：




show signature(object = "designMatrix"):  
显示signature(object = "designMatrix")：


作者（S）----------Author(s)----------


Xiwei Wu, Arthur Li



参见----------See Also----------

contrastMatrix
contrastMatrix


举例----------Examples----------


data(eSetExample)
## One-way Anova[＃单向方差分析]
(design1<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment"))

## Randomized block design[＃随机区组设计]
(design2<- new("designMatrix", target=pData(eSetExample),
   covariates = c("Treatment", "Group")))

## Interaction design[＃互动设计]
(design3<- new("designMatrix", target=pData(eSetExample),
   covariates = c("Treatment", "Group"), intIndex=c(1,2)))
   

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


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