R语言 yaqcaffy包 YAQCStats-class()函数中文帮助文档(中英文对照)

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YAQCStats-class(yaqcaffy)
YAQCStats-class()所属R语言包：yaqcaffy

                                        Class "YAQCStats"
                                         类“YAQCStats”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Holds Quality Control Data for a set of Affymetrix Arrays
拥有一套Affymetrix公司的阵列的质量控制数据


类的对象----------Objects from the Class----------

Objects can be created by calls of the form yaqc providing AffyBatch or ExpressionSet instances as arguments.  YAQCStats is a subclass of QCStats and uses the scale.factor, average.background,  percent.present, arraytype and target attributes of it's super-class.
对象可以创建形式yaqc提供AffyBatch或ExpressionSet实例作为参数调用。 YAQCStats是QCStats的子类，并使用scale.factor，average.background，percent.present，arraytype和target它的超类的属性。


插槽----------Slots----------

Class-specific slots:
类特定的插槽：




log: Object of class "logical" that
log：Object类的"logical"，




average.noise: Object of class "numeric".
average.noise类"numeric"的对象。




morespikes: Object of class "matrix".
morespikes类"matrix"的对象。




gcos.probes: Object of class "matrix". GAPDH and β-actin qc probes
gcos.probes类"matrix"的对象。 GAPDH和β-肌动蛋白QC探针的




bio.calls: Object of class "matrix". BioB 5',3',M and BioC, BioC 5',3'
bio.calls类"matrix"的对象。 BioB 5，3，M和BioC，BioC 5，3




objectVersion Character describing the version
objectVersion字符描述的版本




yaqcControlProbes Object of class YaqcControlProbes that defines the different probes used for the quality
yaqcControlProbes对象类YaqcControlProbes的定义用于质量不同的探针

See also QCStats for slots inherited from super-class.
也见QCStats从超类继承的插槽。


方法----------Methods----------

Methods inherited from the super-class:
从超类继承的方法：




target signature(object = "YAQCStats"): Returns a
目标的signature(object = "YAQCStats")：返回




avbg signature(object = "YAQCStats"): Returns a vector
avbgsignature(object = "YAQCStats")：返回一个vector




minbg signature(object = "YAQCStats"): Returns a
minbgsignature(object = "YAQCStats")：返回




percent.present signature(object = "YAQCStats"): Returns a vector listing the percentage of probesets called
percent.presentsignature(object = "YAQCStats")：返回一个向量上市百分比probesets




sfs signature(object = "YAQCStats"): Returns a vector of scale factors for each array (as produced by the MAS 5.0
SFSsignature(object = "YAQCStats")：返回每个阵列向量的规模因素（如生产的MAS 5.0

Class-specific methods:
类的具体方法：




isLog signature(object = "YAQCStats"): Returns a logical specifying if the expression intensities are in log2
isLogsignature(object = "YAQCStats")：返回一个逻辑，如果指定的表达强度以log2




moreSpikeInProbes signature(object = "YAQCStats"): Returns a matrix of intensities for the internal spike
moreSpikeInProbessignature(object = "YAQCStats")：返回内部尖峰的强度matrix




gcosProbes signature(object = "YAQCStats"): Returns a matrix of intensities for GAPDH and β-actin
gcosProbessignature(object = "YAQCStats")：返回GAPDH和matrix-肌动蛋白的强度β




avns signature(object = "YAQCStats"): Returns a vector
avnssignature(object = "YAQCStats")：返回一个vector




bioCalls signature(object = "YAQCStats"): Returns a matrix of Present(P)/Marginal(M)/Absent(A) calls for the spike
bioCallssignature(object = "YAQCStats")：返回matrix目前（P）/边缘（男）/缺席（一），要求穗




arrays signature(object = "YAQCStats"): Returns the
的阵列signature(object = "YAQCStats")：返回




plot signature(object = "YAQCStats"): visual representation of the qc metrics. (see yaqc.plot for
图signature(object = "YAQCStats")：QC指标的可视化表示。 （见yaqc.plot




summary signature(x = "YAQCStats", latex = "logical"): The outliers of the YAQCStats quality control metrics are summerized and returned as a data frame. If latex is set to TRUE (default), the data frame is
摘要signature(x = "YAQCStats", latex = "logical")：离群点YAQCStats是summerized质量控制指标，并作为一个数据框返回。如果latex设置为TRUE（默认），数据框是




show signature(object = "YAQCStats"): displays the content
显示signature(object = "YAQCStats")：显示内容




merge signature(x = "YAQCStats", y ="YAQCStats"): merges two compatible YAQCStats objects, i.e. that have the same values for the log, target and arraytype
合并signature(x = "YAQCStats", y ="YAQCStats")：的合并两个兼容YAQCStats对象，即有相同的价值观log，target和arraytype




arrays signature(object = "YAQCStats"): shows the array
的阵列signature(object = "YAQCStats")：显示阵列




objectVersion signature(object = "YAQCStats"): Returns the version of the yaqcaffy package as a character
的objectVersionsignature(object = "YAQCStats")：返回一个yaqcaffycharacter包的版本




getYaqcControlProbes signature(object = "YAQCStats"): Returns the YaqcControlProbes object that has
getYaqcControlProbessignature(object = "YAQCStats")：返回YaqcControlProbes对象


作者（S）----------Author(s)----------


Laurent Gatto



参见----------See Also----------

QCStats from package simpleaffy and YaqcControlProbes.
QCStats包simpleaffy和YaqcControlProbes。

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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