A list based class for storing the results of a segmentation algorithm. They are generally created by running one of the following functions runHomHMM, runGLAD or runDNAcopy on an MAList object.
基于列表的类,用于存储的分割算法的结果。他们一般都是通过运行以下功能之一创建runHomHMM,runGLAD或runDNAcopy上MAList object。
角子机/列表组件----------Slots/List Components----------
Objects should contain the following list components:
对象应包含以下列表中的组件:
Predicted value of the state.
预测值的状态。
Dispersion.
分散。
Observed value.
观测值。
Numeric value.
数值。
The number of states per chromosome. Each row represents a chromosome and each column is an array.
每个染色体的国家的数目。每一行代表一个染色体,每一列是一个数组。
data.frame that contains the chromosome and position on the chromosome for each clone. Used for plotting functions.
数据框,其中包含每个克隆的染色体上的位置和染色体。用于图功能。
Optional:<br>
可选:<BR>
Smoothed value for the clone.
克隆的平滑值。
Probability of the clone being in the assigned state.
概率克隆在指定的状态。
方法----------Methods----------
SegLists can be subsetted and combined. They also return dimensions so functions such as dim, nrow and ncol are also defined. SegList inherits the show method from the Limma class LargeDataObject. This means that the SegList will print in a relatively compact way.
SegLists可以子集,并结合。他们还返回尺寸所以如dim,nrow和ncol也被定义的功能。 SegList继承的Limma类showLargeDataObject方法。这意味着,SegList将打印在一个相对紧凑的方式。