Intensity-class(ShortRead)
Intensity-class()所属R语言包：ShortRead
"Intensity", "IntensityInfo", and "IntensityMeasure" base
“强度”，“IntensityInfo”，的“IntensityMeasure”碱基
译者：生物统计家园网 机器人LoveR
描述----------Description----------
The Intensity, IntensityMeasure, and IntensityInfo classes represent and manipulate image intensity measures. Instances from the class may also contain information about measurement errors, and additional information about the reads from which the intensities are derived.
Intensity，IntensityMeasure，IntensityInfo类代表和操纵图像强度的措施。从类的实例，也可能包含的测量误差，信息和其他信息读取从中得到强度。
Intensity, and IntensityMeasure, are virtual classes, and cannot be created directly. Classes derived from IntensityMeasure (e.g., ArrayIntensity) and Intensity (e.g., SolexaIntensity) are used to represent specific technologies.
Intensity，IntensityMeasure，虚拟类，不能被直接创建。来自的类IntensityMeasure（例如，ArrayIntensity）Intensity（例如，SolexaIntensity）用来表示特定的技术。
类的对象----------Objects from the Class----------
ArrayIntensity objects can be created with calls of the form ArrayIntensity(array(0, c(1,2,3))).
ArrayIntensity对象可以创建检测形式ArrayIntensity(array(0, c(1,2,3)))。
Objects of derived classes can be created from calls such as the SolexaIntensity constructor, or more typically by parsing appropriate files (e.g., readIntensities).
派生类的对象，可以创建从SolexaIntensity构造函数，或者更典型，如检测，通过解析相应的文件（例如，readIntensities）。
插槽----------Slots----------
Class Intensity has slots:
Intensity类槽：
readInfo: Object of class "IntensityInfo" containing columns for the lane, tile, x, and y coordinates of the
readInfo类"IntensityInfo"包含车道，瓷砖，X和Y列对象的坐标
intensity: Object of class "IntensityMeasure" containing image intensity data for each
intensity类"IntensityMeasure"含有图像的每个强度数据对象
measurementError: Object of class "IntensityMeasure" containing measures of image intensity
measurementError类"IntensityMeasure"包含图像强度的措施：对象
.hasMeasurementError: Length 1 logical variable indicating whether intensity standard errors are included
.hasMeasurementError：长度1个逻辑变量表示是否包含强度标准误差
Classes IntensityInfo and IntensityMeasure are virtual classes, and have no slots.
类IntensityInfo和IntensityMeasure是虚拟类，并没有插槽。
延伸----------Extends----------
These classes extend ".ShortReadBase", directly.
这些类扩展".ShortReadBase"，直接。
方法----------Methods----------
Methods and accessor functions for Intensity include:
方法和Intensity的存取函数包括：
readInfo signature(object = "Intensity"): access the
readInfosignature(object = "Intensity")：访问
intensity signature(object = "Intensity"): access the
强度signature(object = "Intensity")：访问
measurementError signature(object = "Intensity"): access the nse slot of object, or signal an error if
measurementErrorsignature(object = "Intensity")：访问nseobject插槽的，或者一个错误信号
dim signature(object = "Intensity"): return the dimensions (e.g., number of reads by number of cycles) represented
暗淡signature(object = "Intensity")：返回的尺寸（例如，数读取周期数）代表
show signature(object = "Intensity"): provide a
显示signature(object = "Intensity")：提供1
Subsetting "[" is available for the IntensityMeasure class; the drop argument to "[" is ignored.
子集"["是IntensityMeasure类;drop"["被忽略的参数。
Subsetting with "[[" is available for the ArrayIntensity class. The method accepts three arguments, corresponding to the read, base, and cycle(s) to be selected. The return value is the array (i.e., underlying data values) corresponding to the selected indices.
"[["子集是ArrayIntensity类。该方法接受三个参数，读的基础上，与周期（s）被选中。返回值是对应到选定的指标阵列（即基础数据值）。
作者（S）----------Author(s)----------
Martin Morgan <mtmorgan@fhcrc.org>
参见----------See Also----------
readIntensities
readIntensities
举例----------Examples----------
showMethods(class="Intensity", where=getNamespace("ShortRead"))
example(readIntensities)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
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发表于 2012-2-26 14:04:42
