resourcerer2BioC(Resourcerer)
resourcerer2BioC()所属R语言包：Resourcerer
A function that downloads an annotation file from TIGR
一个功能，从TIGR注释文件下载
译者：生物统计家园网 机器人LoveR
描述----------Description----------
TIGR Resourcerer maintains various annotation files for Affymetrix or cDNA chips. This function allows users to create a bioC annotation data package for the probes contained in the Resourcerer annotation file.
TIGR的Resourcerer保持Affymetrix的基因芯片的各种注释文件。此功能允许用户创建一个bioC注释数据在的Resourcerer注释文件中包含的探针包。
用法----------Usage----------
resourcerer2BioC(
which, organism = c("human", "mouse", "rat"),
destDir = file.path(.path.package("Resourcerer"), "temp"),
pkgName, pkgPath, baseMapType = c("gbNRef", "gb", "ug", "ll"),
version = "1.1.0", baseUrl =
"ftp://occams.dfci.harvard.edu/pub/bio/tgi/data/Resourcerer", check =
FALSE, author = list(authors = "Anonymous", maintainer
= "Anonymous <anonymous@email.com>"), exten = "zip")
参数----------Arguments----------
参数：which
which a character string indicating which Resourcerer annotation file to be read in
which一个字符字符串，指示哪个Resourcerer注释的文件要阅读
参数：destDir
destDir a character string for the path of a directory where the downloaded file will be stored. If missing, the temp directory will be the default
destDir一个一个下载的文件将存储目录的路径字符串。如果丢失，临时目录，将是默认
参数：baseUrl
baseUrl a character string for the url of Resourcerer ftp site where directories containing annotation files for human, rat, mouse ... are stored
baseUrl为Resourcerer FTP站点目录包含人类，大鼠，小鼠的注释文件的url的字符串...存储
参数：baseMapType
baseMapType a character string that is either "gb","ug", or "ll" to indicate whether the probe ids in baseName are mapped to GenBack accession numbers, UniGene ids, or LocusLink ids
baseMapType一个字符串，是“GB”，“UG”，或“LL”基名的探针IDS是否被映射到GenBack加入号码，UniGene的IDS，或LocusLink IDS
参数：pkgName
pkgName a character string for the name of the data package to be built (e. g. hgu95a, rgu34a)
pkgName一个待建的数据包的名称字符串（如hgu95a，rgu34a）
参数：pkgPath
pkgPath a character string for the full path of an existing directory where the built backage will be stored
pkgPath为现有的目录的完整路径字符串建成backage将被保存
参数：organism
organism a character string for the name of the organism of concern (now can only be "human", "mouse", or "rat")
organism为关注的有机体（现在只能是“人”，“老鼠”，或“鼠”）的名称的字符串
参数：version
version a character string for the version number
version一个版本号的字符串
参数：author
author a list of character strings with an author element for the name of the author and maintainer element for the email address of the author
author与作者和作者的电子邮件地址的维护者元素的名称author元素的字符串列表
参数：check
check a boolean incicating whether to check the mappings between probe ids and LocusLink ids obtained from Resourcer and bioC AnnotationDbi when baseMapType is 'll'
check的布尔incicating之间是否要检查探针ID和LocusLink IDS从Resourcer和bioC AnnotationDbi获得当baseMapType是LL映射
参数：exten
exten a character string for the extension (e. g. zip) of the source data file to be processed
exten扩展字符串的数据源（例如，zip）文件进行处理
Details
详情----------Details----------
baseUrl is the root directory of TIGR ftp site for Resourcerer that contains subdirectories holding data for different organism.
baseUrl是持有不同的生物体的数据，其中包含子目录的Resourcerer TIGR的FTP站点的根目录。
值----------Value----------
Function resourcerer2BioC returns invisible() if successfully executed.
函数resourcerer2BioC返回无形（），如果成功执行。
作者（S）----------Author(s)----------
Jianhua Zhang
参考文献----------References----------
<h3>See Also</h3>
举例----------Examples----------
#############################################################[＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃ ＃＃＃＃＃＃＃＃＃＃]
## The example takes a loooong time (about an hour) to run ##[＃例如需要loooong时间（约一个小时），运行＃]
#############################################################[＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃＃ ＃＃＃＃＃＃＃＃＃＃]
if(interactive()){
resourcerer2BioC("Agilent_Human1_cDNA.zip", baseMapType = "gbNRef")
unlink(file.path(.path.package("Resourcerer"), "temp",
"Agilent_Human1_cDNA.db"), TRUE)
}
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-26 12:53:35
