flowPlate-class(plateCore)
flowPlate-class()所属R语言包:plateCore
The flowPlate class.
flowPlate类。
译者:生物统计家园网 机器人LoveR
描述----------Description----------
flowPlates are the basic data containers for the plateCore package. A flowPlate is essentially a flowSet-class, plus a data.frame describing the layout of the plate and contents of individual wells.
flowPlates基本为plateCore包的数据容器。一个flowPlate基本上是flowSet-class,加上data.frame描述的板块和个别井的内容布局。
插槽----------Slots----------
plateName: A character string containing the name of the plate.
plateName:一个character字符串,其中包含的板块名称。
plateSet: A flowSet-class containing FCS event data. Prior to creating a flowPlate, the FCS files are first read into a flowSet-class using read.flowSet.
plateSet:一个flowSet-class含FCS的事件数据。之前,创造一个flowPlate,FCS文件先读入一个flowSet-class使用read.flowSet。
wellAnnotation: A data.frame describing the layout of the plate. Each row describes one channel for a well.
wellAnnotation:data.frame描述板的布局。每一行描述了一个良好的渠道。
方法----------Methods----------
[, [[ Subsetting. x[i] where i is either a scalar or character corresponding to a sample name, returns a flowPlate object, and x[[i]] a flowFrame object.
[[子集。 x[i]其中i是一个标量或character对应一个样品名称,返回一个flowPlate对象,和x[[i]]flowFrame对象。
Usage:
用法:
flowSet[i]
flowSet[i]
flowSet[[i]]
flowSet[[i]]
作者(S)----------Author(s)----------
Errol Strain, Florian Hahne, Perry Haaland
举例----------Examples----------
library(plateCore)
data(plateCore)
##Look at the wellAnnotation[#看看,wellAnnotation]
wellAnnotation[1:4,]
## Get the lymphocytes[#获取淋巴单元]
rectGate <- rectangleGate("FSC-H"=c(300,700),"SSC-H"=c(50,400))
pbmcPlate <- Subset(pbmcPlate, rectGate)
## Create a flowPlate object from the platePBMC and the wellAnnotation[#创建一个从“platePBMC flowPlate对象的wellAnnotation]
fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1")
## Subset the flowPlate, creating another flowPlate[#子集flowPlate,创造另一个flowPlate]
fpSmall <- fp["A01"]
## Extract a flowFrame from a flowPlate[#提取flowPlate flowFrame]
ff <-fp[["A01"]]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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