R语言 oligoClasses包 CopyNumberSet-class()函数中文帮助文档(中英文对照)

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CopyNumberSet-class(oligoClasses)
CopyNumberSet-class()所属R语言包：oligoClasses

                                        Class "CopyNumberSet"
                                         类“CopyNumberSet”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Container for storing total copy number estimates and confidence scores of the copy number estimates.
估计总套数的拷贝数的估计和信心分数为存储容器。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("CopyNumberSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, copyNumber, cnConfidence, ...).
创建对象可以通过检测的形式new("CopyNumberSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, copyNumber, cnConfidence, ...)。


插槽----------Slots----------




assayData: Object of class "AssayData" ~~
assayData：Object类的"AssayData"~~




phenoData: Object of class "AnnotatedDataFrame" ~~
phenoData：Object类的"AnnotatedDataFrame"~~




featureData: Object of class "AnnotatedDataFrame" ~~
featureData：Object类的"AnnotatedDataFrame"~~




experimentData: Object of class "MIAxE" ~~
experimentData：Object类的"MIAxE"~~




annotation: Object of class "character" ~~
annotation：Object类的"character"~~




protocolData: Object of class "AnnotatedDataFrame" ~~
protocolData：Object类的"AnnotatedDataFrame"~~




.__classVersion__: Object of class "Versions" ~~
.__classVersion__：Object类的"Versions"~~


延伸----------Extends----------

Class "eSet", directly. Class "VersionedBiobase", by class "eSet", distance 2. Class "Versioned", by class "eSet", distance 3.
类"eSet"，直接。类"VersionedBiobase"，“ESET”级，距离为2。类"Versioned"，“ESET”级，距离3。


方法----------Methods----------




cnConfidence signature(object = "CopyNumberSet"): ...
cnConfidencesignature(object = "CopyNumberSet")：...




cnConfidence<- signature(object = "CopyNumberSet", value = "matrix"): ...
cnConfidence < - signature(object = "CopyNumberSet", value = "matrix")...




coerce signature(from = "CNSet", to = "CopyNumberSet"): ...
要挟signature(from = "CNSet", to = "CopyNumberSet")...




copyNumber signature(object = "CopyNumberSet"): ...
copyNumbersignature(object = "CopyNumberSet")...




copyNumber<- signature(object = "CopyNumberSet", value = "matrix"): ...
copyNumber < - signature(object = "CopyNumberSet", value = "matrix")...




initialize signature(.Object = "CopyNumberSet"): ...
初始化signature(.Object = "CopyNumberSet")...


注意----------Note----------

This container is primarily for platforms for which genotypes are unavailable.  As oligoSnpSet extends this class, methods related to total copy number that do not depend on genotypes can be defined at this level.
这个容器是主要基因型为不可用的平台。 oligoSnpSet扩展这个类，涉及总套数，不依赖于基因型的方法可以定义在这个水平。


作者（S）----------Author(s)----------



R. Scharpf




参见----------See Also----------

For genotyping platforms, total copy number estimates and genotype calls can be stored in the oligoSnpSet class.
用于基因分型平台，总拷贝数的估计和基因型的检测可以存储在oligoSnpSet类。


举例----------Examples----------


showClass("CopyNumberSet")
cnset <- new("CopyNumberSet")
ls(assayData(cnset))

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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