R语言 oligoClasses包 AlleleSet-class()函数中文帮助文档(中英文对照)

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AlleleSet-class(oligoClasses)
AlleleSet-class()所属R语言包：oligoClasses

                                        Class "AlleleSet"
                                         类“AlleleSet”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

A class for storing the locus-level summaries of the normalized intensities
A类为存储归强度的轨迹级摘要


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("AlleleSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, ...).
创建对象可以通过检测的形式new("AlleleSet", assayData, phenoData, featureData, experimentData, annotation, protocolData, ...)。


插槽----------Slots----------




assayData: Object of class "AssayData" ~~
assayData：Object类的"AssayData"~~




phenoData: Object of class "AnnotatedDataFrame" ~~
phenoData：Object类的"AnnotatedDataFrame"~~




featureData: Object of class "AnnotatedDataFrame" ~~
featureData：Object类的"AnnotatedDataFrame"~~




experimentData: Object of class "MIAME" ~~
experimentData：Object类的"MIAME"~~




annotation: Object of class "character" ~~
annotation：Object类的"character"~~




protocolData: Object of class "AnnotatedDataFrame" ~~
protocolData：Object类的"AnnotatedDataFrame"~~




.__classVersion__: Object of class "Versions" ~~
.__classVersion__：Object类的"Versions"~~


延伸----------Extends----------

Class "eSet", directly. Class "VersionedBiobase", by class "eSet", distance 2. Class "Versioned", by class "eSet", distance 3.
类"eSet"，直接。类"VersionedBiobase"，“ESET”级，距离为2。类"Versioned"，“ESET”级，距离3。


方法----------Methods----------




allele signature(object = "AlleleSet"): extract allele specific summaries. For 50K (XBA and Hind) and 250K (Sty and Nsp) arrays, an additional argument (strand) must be used (allowed
的等位基因signature(object = "AlleleSet")：提取等位基因特异的摘要。为50K（XBA和Hind）和“250K（麦粒肿和NSP）阵列，一个额外的参数（链），必须使用（允许




bothStrands signature(object = "AlleleSet"): tests if
bothStrandssignature(object = "AlleleSet")：测试




bothStrands signature(object = "SnpFeatureSet"): tests if
bothStrandssignature(object = "SnpFeatureSet")：测试




db signature(object = "AlleleSet"): link to database connection.
DBsignature(object = "AlleleSet")：链接到数据库的连接。




getA signature(object = "AlleleSet"): average
木屐signature(object = "AlleleSet")：平均




getM signature(object = "AlleleSet"): log-ratio
getMsignature(object = "AlleleSet")：数比


作者（S）----------Author(s)----------


R. Scharpf



参见----------See Also----------

SnpSuperSet, CNSet
SnpSuperSet，CNSet


举例----------Examples----------


showClass("AlleleSet")
## an empty AlleleSet[＃空AlleleSet]
x <- new("matrix")
new("AlleleSet", senseAlleleA=x, senseAlleleB=x, antisenseAlleleA=x, antisenseAlleleB=x)
##or[＃或]
new("AlleleSet", alleleA=x, alleleB=x)

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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