R语言 marray包 marrayLayout-class()函数中文帮助文档(中英文对照)

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marrayLayout-class(marray)
marrayLayout-class()所属R语言包：marray

                                        Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
                                         类“marrayLayout”，类和cDNA微阵列布局参数的方法

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class is used to keep track of important layout parameters for two-color cDNA microarrays. It contains slots for: the total number of spotted probe sequences on the array, the dimensions of the spot and grid matrices, the plate origin of the probes, information on spotted control sequences (e.g. probe sequences which should have equal abundance in the two target samples, such as housekeeping genes). The terms print-tip-group, grid, spot matrix, and sector are used interchangeably and
这个类是用来保持两色cDNA微阵列布局的重要参数。它包含插槽：斑点阵列上的探针序列的总数，现货和网格矩阵，探针板起源，斑疹控制序列（如探针序列，这应该有两个目标等于丰信息的尺寸样品，如看家基因）。打印头组，格，点矩阵，和部门的交替使用


类的对象----------Objects from the Class----------

Objects can be created by calls of the form   new('marrayLayout',<br>     maNgr      = ...., # Object of class numeric<br>     maNgc      = ...., # Object of class numeric<br>     maNsr      = ...., # Object of class numeric<br>     maNsc      = ...., # Object of class numeric<br>     maNspots   = ...., # Object of class numeric<br>     maSub      = ...., # Object of class logical<br>     maPlate    = ...., # Object of class factor<br>     maControls = ...., # Object of class factor<br>     maNotes    = ...., # Object of class character<br>   )
可以创建对象调用的形式  new('marrayLayout',参考    maNgr      = ...., # Object of class numeric参考    maNgc      = ...., # Object of class numeric参考    maNsr      = ...., # Object of class numeric参考    maNsc      = ...., # Object of class numeric参考     maNspots   = ...., # Object of class numeric参考    maSub      = ...., # Object of class logical参考    maPlate    = ...., # Object of class factor参考    maControls = ...., # Object of class factor参考    maNotes    = ...., # Object of class character参考  )


插槽----------Slots----------




maNgr: Object of class "numeric", number of rows for the grid matrix.
maNgr：Object类的"numeric"，网格矩阵的行数。




maNgc: Object of class "numeric", number of columns for the grid matrix.
maNgc：Object类的"numeric"，网格矩阵的列数。




maNsr: Object of class "numeric", number of rows for the spot matrices.
maNsr：Object类的"numeric"，当场矩阵的行数。




maNsc: Object of class "numeric", number of columns for the spot matrices.
maNsc：Object类的"numeric"，当场矩阵的列数。




maNspots: Object of class "numeric", total number of spots on the array, equal to maNgr x maNgc x maNsr x maNsc.
maNspots：Object类的"numeric"，阵列上的斑点，等于maNgr x maNgc x maNsr x maNsc的总人数。




maSub: Object of class "logical",  indicating which spots are currently being considered.
maSub：Object类的"logical"，表明这点目前正在考虑。




maPlate: Object of class "factor", recording the plate origin of the spotted probe sequences.
maPlate：Object类的"factor"，记录板斑点探针序列起源。




maControls: Object of class "factor", recording the control status of the spotted probe sequences.
maControls：Object类的"factor"，记录斑点探针序列的控制状态。




maNotes: Object of class "character", any notes concerning the microarray layout, e.g., printing conditions.
maNotes：Object类的"character"，关于芯片的布局，例如，印刷条件的任何票据。


方法----------Methods----------




[ signature(x = "marrayLayout"): subsetting operator for spots on the array, ensures that all slots are subset properly.
[signature(x = "marrayLayout")：子集的阵列上的点的经营者，确保所有槽正确的子集。




maControls<- signature(object = "marrayLayout"): slot assignment method.
maControls < - signature(object = "marrayLayout")：时隙分配方法。




maControls signature(object = "marrayLayout"): slot accessor method.
maControlssignature(object = "marrayLayout")：插槽存取方法。




maGridCol signature(object = "marrayLayout"): method which computes a vector of grid column coordinates for each spot.
maGridColsignature(object = "marrayLayout")：计算网格的列向量的方法为每个点的坐标。




maGridRow signature(object = "marrayLayout"): method which computes a vector of grid row coordinates for each spot.
maGridRowsignature(object = "marrayLayout")：计算网格行向量的方法为每个点的坐标。




maLayout<- signature(object = "marrayRaw", value = "marrayLayout"): slot assignment method.
maLayout < - signature(object = "marrayRaw", value = "marrayLayout")：时隙分配方法。




maLayout<- signature(object = "marrayNorm", value = "marrayLayout"): slot assignment method.
maLayout < - signature(object = "marrayNorm", value = "marrayLayout")：时隙分配方法。




maNgc signature(object = "marrayLayout"): slot accessor method.
maNgcsignature(object = "marrayLayout")：插槽存取方法。




maNgc<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maNgc < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




maNgr signature(object = "marrayLayout"): slot accessor method.
maNgrsignature(object = "marrayLayout")：插槽存取方法。




maNgr<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maNgr < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




maNotes signature(object = "marrayLayout"): slot accessor method.
maNotessignature(object = "marrayLayout")：插槽存取方法。




maNotes<- signature(object = "marrayLayout", value = "character"): slot assignment method.
maNotes < - signature(object = "marrayLayout", value = "character")：时隙分配方法。




maNsc signature(object = "marrayLayout"): slot accessor method.
maNscsignature(object = "marrayLayout")：插槽存取方法。




maNsc<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maNsc < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




maNspots signature(object = "marrayLayout"): slot accessor method.
maNspotssignature(object = "marrayLayout")：插槽存取方法。




maNspots<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maNspots < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




maNsr signature(object = "marrayLayout"): slot accessor method.
maNsrsignature(object = "marrayLayout")：插槽存取方法。




maNsr<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maNsr < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




maPlate signature(object = "marrayLayout"): slot accessor method.
maPlatesignature(object = "marrayLayout")：插槽存取方法。




maPlate<- signature(object = "marrayLayout"): slot assignment method.
maPlate < - signature(object = "marrayLayout")：时隙分配方法。




maPrintTip signature(object = "marrayLayout"): method which computes a vector of print-tip-group indices for each spot.
maPrintTipsignature(object = "marrayLayout")：计算每个点的打印头组指数向量的方法。




maSpotCol signature(object = "marrayLayout"): method which computes a vector of spot column coordinates for each spot.
maSpotColsignature(object = "marrayLayout")：计算一个现货列向量的方法，为每个点的坐标。




maSpotRow signature(object = "marrayLayout"): method which computes a vector of spot row coordinates for each spot.
maSpotRowsignature(object = "marrayLayout")方法计算现货行向量为每个点的坐标。




maSub signature(object = "marrayLayout"): slot accessor method.
maSubsignature(object = "marrayLayout")：插槽存取方法。




maSub<- signature(object = "marrayLayout", value = "logical"): slot assignment method.
maSub < - signature(object = "marrayLayout", value = "logical")：时隙分配方法。




maSub<- signature(object = "marrayLayout", value = "numeric"): slot assignment method.
maSub < - signature(object = "marrayLayout", value = "numeric")：时隙分配方法。




print signature(x = "marrayLayout"): print method for "marrayLayout" class.
打印signature(x = "marrayLayout")："marrayLayout"类的打印方法。


作者（S）----------Author(s)----------


Sandrine Dudoit, <a href="http://www.stat.berkeley.edu/~sandrine">http://www.stat.berkeley.edu/~sandrine</a>.



参考文献----------References----------



参见----------See Also----------

marrayRaw, marrayNorm,
marrayRaw，marrayNorm


举例----------Examples----------


## See marrayRaw[＃见marrayRaw]

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


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