get.pathways.by.genes(KEGGSOAP)
get.pathways.by.genes()所属R语言包：KEGGSOAP
Client-side interface to obtain the KEGG pathway ids
客户端接口来获取KEGG通路标识
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Given a set of KEGG gene/enzyme/compound/reation identifiers, the functions query the KEGG PATHWAY database for all the pathways in which items represented by the given set of identifers are involved
鉴于一套KEGG基因/酶/复合/ reation标识符，功能KEGG通路数据库查询在给定的identifers代表项目涉及的所有途径
用法----------Usage----------
get.pathways.by.genes(genes.id.list)
get.pathways.by.enzymes(enzyme.id.list)
get.pathways.by.compounds(compound.id.list)
get.pathways.by.reactions(reaction.id.list)
参数----------Arguments----------
参数：genes.id.list
genes.id.list a vector of character strings for the ids used by KEGG to represent genes. An id normally consists of three letters followed by a colon and then several numbers. The three letters are from the first letter of the genus name and the first two letters of the species name of the scientific name of the organism of concern (e. g. hsa:111 for Homo Sapiens)
genes.id.listKEGG代表基因所用的ID字符串的向量。一个ID通常由三个字母，后跟一个冒号，然后几个数字。这三个字母是由属名第一个字母和关注的有机体的学名的种名的前两个字母（如HSA：111智人）
参数：enzyme.id.list
enzyme.id.list a vector of character strings for enzyme commission numbers
enzyme.id.list酶的佣金号码字符串矢量
参数：compound.id.list
compound.id.list a vector of character strings for the ids used by KEGG to represent compounds. A compound id begins with cpd: followed by a combination of letters and numbers (e. g. cpd:C00579)
compound.id.listKEGG代表化合物中使用的ID字符串的向量。一种化合物ID开始CPD：由字母和数字组合（C00579例如：CPD）
参数：reaction.id.list
reaction.id.list a vector of character strings for the ids used by KEGG to represent reactions. A reaction id begins with rn: followed by a combination of letters and numbers (e. g. rn:R00268)
reaction.id.listKEGG代表反应所用的ID字符串的向量。反应ID开始RN：由字母和数字的组合（：R00268例如。RN）
值----------Value----------
The functions return a vector of KEGG pathway ids
该函数返回一个KEGG通路IDS的向量
作者（S）----------Author(s)----------
Jianhua Zhang
参考文献----------References----------
<h3>See Also</h3> <code>get.genes.by.pathway</code>, <code>get.enzymes.by.pathway</code>, <code>get.compounds.by.pathway</code>,
举例----------Examples----------
# There seems to be some problem at the server side. Use try[似乎有一些问题，在服务器端。使用try]
pathways <- try(get.pathways.by.genes(c("eco:b0077", "eco:b0078")))
pathways <- try(get.pathways.by.enzymes("ec:1.3.99.1"))
pathways <- try(get.pathways.by.compounds(c("cpd:C00033", "cpd:C00158")))
pathways <- try(get.pathways.by.reactions(c("rn:R00959",
"rn:R02740", "rn:R00960", "rn:R01786")))
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 23:02:57
