R语言 inveRsion包 scan-class()函数中文帮助文档(中英文对照)

loveR

scan-class(inveRsion)
scan-class()所属R语言包：inveRsion

                                        Class "scan"
                                         类“扫描”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Results from scanning the genome with the inversion model for trial segments of fixed window size.
结果从基因组扫描与固定窗口大小的试验段的反演模型。


类的对象----------Objects from the Class----------

scan objects are typically generated by callings to the constructor function scanInv
scan对象通常是由召唤产生的构造函数scanInv


插槽----------Slots----------




leftBP: Object of class "matrix" Left brake-point coordinates (right SNP)
leftBP：对象类"matrix"左刹车点坐标（右单核苷酸多态性）




rightBP: Object of class "matrix" Right brake-point coordinates (right SNP)
rightBP：对象类"matrix"右制动点坐标（右单核苷酸多态性）




leftBP2: Object of class "matrix" Left brake-point coordinates  (left SNP)
leftBP2：对象类"matrix"左刹车点坐标（左单核苷酸多态性）




rightBP2: Object of class "matrix"  Right brake-point coordinates  (right SNP)
rightBP2：对象类"matrix"右制动点坐标（右单核苷酸多态性）




LogLike: Object of class "matrix" Log-likelihood ratio for each trial segment
LogLike类"matrix"数似然比为每个试验段的对象




prob: Object of class "matrix" probability of no-inversion for each trial segment
prob类没有反转的概率"matrix"对象为每个试验段




ent: Object of class "matrix" entropy for each trial segment
ent类"matrix"熵对象为每个试验段




entTh: Object of class "matrix" entropy threshold for each trial segment
entTh类"matrix"熵阈值的对象为每个试验段




bic: Object of class "matrix" BIC for each trial segment
类bicBIC的对象"matrix"：每个试验段




window: Object of class "numeric" window size
window类"numeric"窗口大小：对象


方法----------Methods----------




getInv signature(object = "scan"): gets scan results into a matrix
getInvsignature(object = "scan")：进入一个矩阵扫描结果




getROIs signature(object = "scan"): get regions of interest, overlapping trial segments with significant BIC
getROIssignature(object = "scan")：区域的利益，重叠的试验段显著的BIC




listInv signature(object = "scan"): determines the inversion sequence for each ROI
listInvsignature(object = "scan")：确定每个投资回报率的反演序列




plot signature(x = "scan"): plots scan results, set option which=c("bic","log","prob","ent") to plot BIC, log-likelihood ratio, probability of no inversion or entropy; and thBic=0 to plot segments with BIC greater than 0
图signature(x = "scan")：图scan结果，设置选项which=c("bic","log","prob","ent")绘制的BIC，对数似然比，没有反转或熵的概率;thBic=0绘制段的BIC更大大于0




show signature(object = "scan"): shows scan results for each ROI
显示signature(object = "scan")：显示每个ROI的扫描结果


作者（S）----------Author(s)----------


Alejandro Caceres <a href="mailto:acaceres@creal.cat">acaceres@creal.cat</a>



参见----------See Also----------

listInv, HaploCode, getInv, getROIs
listInv，HaploCode，getInv，getROIs


举例----------Examples----------


data(scanRes)
scanRes
plot(scanRes,which="bic",thBic=0)

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。