GOHyperGResult-class(GOstats)
GOHyperGResult-class()所属R语言包：GOstats
Class "GOHyperGResult"
类“GOHyperGResult”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This class represents the results of a test for overrepresentation of GO categories among genes in a selected gene set based upon the Hypergeometric distribution.
这个类别代表之间的GO类别的比例过高，在选定的一组基因，根据超几何分布的基因测试结果。
For details on extracting information from this object, be sure to read the accessor documentation in the Category package: HyperGResult-accessors.
从这个对象中提取信息的详细信息，请务必阅读HyperGResult的存取存取文件：在分类包。
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("GOHyperGResult", ...).
创建对象可以通过检测的形式new("GOHyperGResult", ...)。
插槽----------Slots----------
goDag: Object of class "graph" representing
goDag：Object类的"graph"代表
pvalue.order: Object of class "integer".
pvalue.order类"integer"的对象。
annotation: Object of class "character". The
annotation类"character"的对象。 “
geneIds: Object of class "ANY". The intersection of the gene identifiers given as input and the
geneIds类"ANY"的对象。作为输入和基因标识的交集
testName: Object of class "character".
testName类"character"的对象。
pvalueCutoff: Object of class "numeric". The cutoff for significance used for some testing methods.
pvalueCutoff类"numeric"的对象。截止意义用于一些测试方法。
conditional: A logical indicating whether the
conditional：逻辑表示是否
testDirection: A string which can be either "over" or "under". This determines whether the test performed detects
testDirection：一个字符串，它可以是要么“过度”或“下的”。这将决定是否进行试验检测
延伸----------Extends----------
Class "HyperGResultBase", directly.
类"HyperGResultBase"，直接。
方法----------Methods----------
goDag signature(r = "GOHyperGResult"): return the graph instance representing the DAG of the
goDagsignature(r = "GOHyperGResult")：返回graph实例代表的DAG
condGeneIdUniverse signature(r = "GOHyperGResult"): return a list named by the tested GO terms. Each element of the list is a vector of the remaining gene identifiers (from the gene universe) annotated at the corresponding GO term after the identifiers from significant children were removed. This is only available when the calculation performed used the conditional Hypergeometric
condGeneIdUniversesignature(r = "GOHyperGResult")：返回测试的GO术语命名的名单。列表中的每个元素是一个向量的其余基因标识（从宇宙基因）显著儿童的标识符被拆除后，相应的围棋术语注解。这是唯一可用的计算执行时使用的条件超几何
summary signature(r = "GOHyperGResult"): Returns a data.frame summarizing the test result. Optional arguments pvalue and categorySize allow specification of maximum p-value and minimum categorySize, respectively. Optional argument htmlLinks is a logical value indicating whether to add HTML links (useful in conjunction with xtables print method with type set to
总结signature(r = "GOHyperGResult")：返回一个data.frame总结测试结果。可选参数pvalue和categorySize允许的最大p值和最低categorySize的规范，分别。可选参数htmlLinks是一个逻辑值，指示是否添加HTML链接（xtables一起type设置为有用的打印方法
htmlReport signature(r = "GOHyperGResult"): Write an HTML version of the table produced by the summary method. The path of a file to write the report to can be specified using the file argument. The default is file="" which will cause the report to be printed to the screen. If you wish to create a single report comprising multiple results you can set append=TRUE. The default is FALSE (overwrite preexisting report file). You can specify a string to use as an identifier for each table by providing a value for the label argument. Additional named arguments will be
htmlReportsignature(r = "GOHyperGResult")：summary方法产生的表写的HTML版本。使用file参数，可以指定文件的路径写报告。默认的是file=""这会导致报告被打印到屏幕上。如果你想建立一个单一的报告，包括多个结果，你可以设置append=TRUE。默认是FALSE（覆盖已经存在的报告文件）。你可以指定一个字符串为每个表的标识符使用提供了价值label参数。额外的命名参数将
description signature(object = "GOHyperGResult"):
说明signature(object = "GOHyperGResult")：
作者（S）----------Author(s)----------
Seth Falcon
参见----------See Also----------
HyperGResult-accessors
HyperGResult的存取
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-25 20:54:32
