Class "GOstructure" (Deprecated)
类“GOstructure”(已过时)
译者:生物统计家园网 机器人LoveR
描述----------Description----------
The class GOstructure stores the Gene Ontology information that can be used by the gtGO function to find a GO subgraph significantly associated with a response variable. Objects of type GOstructure are typically made with
类GOstructure存储gtGO功能,可以通过找到一个好子与响应变量显着相关的基因本体信息。对象类型GOstructure通常用
插槽----------Slots----------
ids: Object of class "character". Vector of GO identifiers.
ids:“人物”类的对象。好标识的向量。
offspring: A named list of vectors of GO identifiers. Lists all offspring terms of each term.
offspring:一个好标识的向量命名名单。列出每学期的所有后代条款。
ancestors: A named list of vectors of GO identifiers. Lists all ancestor terms of each term.
ancestors:一个好标识的向量命名名单。列出每学期的所有祖先条款。
genesets: A named list of vectors of gene identifiers. Lists the genes annotated to each GO id.
genesets:一个命名为向量的基因标识。列出每个GO ID注明的基因。
方法----------Methods----------
show (GOstructure): Summarizes the object.
秀(GOstructure):总结的对象。
length (GOstructure): Gives the number of GO ids in the object.
给对象长度(GOstructure):好IDS。
genesets (GOstructure): Extracts the genesets slot.
genesets(GOstructure):提取genesets插槽。
作者(S)----------Author(s)----------
Jelle Goeman: <a href="mailto:j.j.goeman@lumc.nl">j.j.goeman@lumc.nl</a>; Jan Oosting