R语言 GGtools包 eqtlTestsManager-class()函数中文帮助文档(中英文对照)

loveR

eqtlTestsManager-class(GGtools)
eqtlTestsManager-class()所属R语言包：GGtools

                                        Class "eqtlTestsManager"
                                         类“eqtlTestsManager”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

interface to ff files that store results for large numbers of eQTL tests
大量的的eQTL测试的结果存储接口FF文件


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("eqtlTestsManager", ...), or new("cisTransDirector", ...).  The mkCisTransDirector function should be used for the latter task.
对象可以创建检测形式new("eqtlTestsManager", ...)或new("cisTransDirector", ...)。 mkCisTransDirector函数应当用于后者的任务。

A manager object collects metadata and reference information regarding tests relating  a single set of expression measures (gene-oriented) and a collection of structural variants (snp-oriented).
一位经理的对象收集有关测试有关的表达措施（基因）和结构变异的收集（SNP面向）的单套的元数据和参考信息。

A director object collects metadata and reference information for a specified set of managers.
董事对象收集的经理指定的一组元数据和参考信息。


插槽----------Slots----------




fflist: Object of class "list" collection of serialized
fflist：对象的序列化的类"list"收集




call: Object of class "call" call for auditing
call：Object类的"call"要求审计




sess: Object of class "ANY" sessionInfo() result
sess：对象类"ANY"sessionInfo（）的结果




exdate: Object of class "ANY" execution date
exdate类"ANY"执行日期：对象




shortfac: Object of class "numeric" factor by which short int data are
shortfac：对象类"numeric"因素，短整型数据




geneanno: Object of class "character" name of annotation package documenting
geneanno类"character"注释包名称对象记录




df: Object of class "numeric" number of degrees of freedom of chi-square
df：对象类"numeric"卡方的自由度数




summaryList: Object of class "list" that includes references to ff files with per-chromosome MAF and genotype frequency (GTF) statistics per SNP.  These summary statistics can be used with the
summaryList：类"list"每个染色体农林部和每个SNP的基因型频率（广交会）进行统计，包括FF文件的引用的对象。可以使用这些统计摘要


方法----------Methods----------




[ signature(x = "eqtlTestsManager", i = "rsid", j = "probeId", drop = "ANY"): This gives matrix-like extraction idiom to retrieve chisquared statistics from the ff
[signature(x = "eqtlTestsManager", i = "rsid", j = "probeId", drop = "ANY")：这提供类似矩阵提取成语检索从FF chisquared的统计数字，




[ signature(x = "cisTransDirector", i = "character", j = "character", drop = "ANY"): ...
[signature(x = "cisTransDirector", i = "character", j = "character", drop = "ANY")...




show signature(object = "eqtlTestsManager"): ...
显示signature(object = "eqtlTestsManager")：...




show signature(object = "cisTransDirector"): ...
显示signature(object = "cisTransDirector")：...




probeNames signature(object = "eqtlTestsManager"): extract the probe names as
probeNamessignature(object = "eqtlTestsManager")：提取探针名称




probeNames signature(object = "cisTransDirector"): extract the probe names as a list
probeNamessignature(object = "cisTransDirector")：提取探针名称列表




probesManaged signature(mgr = "eqtlTestsManager", ffind="numeric"): extract the probe names for a specific ff element of a manager
probesManagedsignature(mgr = "eqtlTestsManager", ffind="numeric")：提取FF为一个特定的元素经理探针名称




snpsManaged signature(mgr = "eqtlTestsManager", ffind="numeric"): extract the snp names for a specific ff element of a manager
snpsManagedsignature(mgr = "eqtlTestsManager", ffind="numeric")：提取一个特定的FF元素经理SNP名称


注意----------Note----------

Instances of this class can be coerced to instances of eqtlTestsManager to facilitate management by a cisTransDirector.  Objects of class eqtlTestsManager include references to pathnames on the system on which the objects are created.  These can be modified if serialized objects are moved along with the folder of ff-formatted outputs.
这个类的实例可以强制eqtlTestsManager的实例，以方便管理cisTransDirector。类eqtlTestsManager对象包括路径上的系统上创建对象的引用。这些可以修改，如果序列化的对象被移到FF格式输出的文件夹。


作者（S）----------Author(s)----------



VJ Carey <stvjc@channing.harvard.edu>




举例----------Examples----------


# look at example(eqtlTests) for workout[在（例如eqtlTests）寻找锻炼]
showClass("eqtlTestsManager")
showClass("cisTransDirector")

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。