degnerASE01(GGtools)
degnerASE01()所属R语言包：GGtools
transcription of a table from a paper by Degner et al
从文件转录Degner等表
译者：生物统计家园网 机器人LoveR
描述----------Description----------
transcription of a table from a paper by Degner et al, involving identification of genes with allele-specific expression discovered by RNA-seq
表转录从Degner等文件，涉及发现RNA-seq的等位基因特异性表达基因的鉴定，
用法----------Usage----------
data(degnerASE01)
格式----------Format----------
A data frame with 55 observations on the following 10 variables.
与55以下10个变量的观测数据框。
rsnum a factor with levels rs10266655 rs1042448 rs1046747 rs1047469 rs1059307 rs1060915 rs11009147 rs1127326 rs11376 rs11570126 rs11578 rs1158 rs13306758 rs13309 rs16952692 rs17014852 rs17459 rs1879182 rs2070924 rs2071888 rs2089910 rs2234978 rs2271920 rs2530680 rs3025040 rs3170545 rs325400 rs368116 rs3819946 rs3871984 rs4784800 rs4982685 rs558018 rs6568 rs6682136 rs6890805 rs7046 rs705 rs7121 rs7141712 rs7192 rs7695 rs7739387 rs8023358 rs8084 rs8429 rs8647 rs8905 rs9038 rs916974
rsnum与水平的因素rs10266655rs1042448rs1046747rs1047469rs1059307rs1060915rs11009147rs1127326 rs11376rs11570126rs11578rs1158rs13306758rs13309rs16952692rs17014852rs17459rs1879182 rs2070924rs2071888rs2089910rs2234978rs2271920rs2530680rs3025040rs3170545rs325400rs368116 rs3819946rs3871984rs4784800rs4982685rs558018rs6568rs6682136rs6890805rs7046rs705 rs7121rs7141712rs7192rs7695rs7739387rs8023358rs8084rs8429rs8647rs8905 rs9038rs916974
refreads a numeric vector
refreads一个数值向量
nonrefreads a numeric vector
nonrefreads一个数值向量
miscall a numeric vector
miscall一个数值向量
chr a factor with levels chr1 chr10 chr11 chr12 chr14 chr15 chr16 chr17 chr18 chr19 chr2 chr20 chr22 chr5 chr6 chr7 chr8 chr9
chr与水平的因素chr1chr10chr11chr12chr14chr15chr16chr17 chr18chr19chr2chr20chr22chr5chr6chr7chr8chr9
loc a numeric vector
loc一个数值向量
gene a factor with levels ADAR ADPGK AKAP2 AP4M1 ATF5 BIN1 BRCA1 C6orf106 CCL22 CD59 CRYZ DFNA5 ENSA FAS GNAS GYPC HLA-DPB1 HLA-DRA HMMR ITGB1 LSP1 MADD MARK3 ME2 MEF2A MGAT1 MRPL52 MTMR2 NF2 NIN NUP62 OAS2 PALM2-AKAP2 PIP4K2A PRKAR1A PTK2B SAR1A SEC22B SEMA4A SEPT9 SLC2A1 SNHG5 SNURF/SNRPN STX16 TAF6 TAPBP VEGFA
gene与水平的因素ADARADPGKAKAP2AP4M1ATF5BIN1BRCA1C6orf106 CCL22CD59CRYZDFNA5ENSAFASGNASGYPCHLA-DPB1HLA-DRA HMMRITGB1LSP1MADDMARK3ME2MEF2AMGAT1MRPL52MTMR2 NF2NINNUP62OAS2PALM2-AKAP2PIP4K2APRKAR1APTK2BSAR1ASEC22B SEMA4ASEPT9SLC2A1SNHG5SNURF/SNRPNSTX16TAF6TAPBPVEGFA
indiv a factor with levels GM19238 GM19239
indiv与水平的因素GM19238GM19239
eqtl a factor with levels Yes
eqtl与水平的因素Yes
imprint a logical vector
imprint逻辑向量
源----------Source----------
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data. Jacob F. Degner 1,3,, John C. Marioni 1,, Athma A. Pai 1, Joseph K. Pickrell 1, Everlyne Nkadori 1,2, Yoav Gilad 1, and Jonathan K. Pritchard 1,2, Bioinformatics 2009.
检测等位基因特异表达RNA测序数据读取映射的偏见的影响。雅各楼Degner 1,3，约翰·C·Marioni 1，Athma A.排1，约瑟夫光Pickrell 1，1,2 Everlyne Nkadori，Yoav吉拉德1，和Jonathan K.普里查德1,2 2009年，生物信息学。
举例----------Examples----------
data(degnerASE01)
degnerASE01[1:4,]
## maybe str(degnerASE01) ; plot(degnerASE01) ...[＃也许STR（degnerASE01）;图（degnerASE01）...]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
|
发表于 2012-2-25 19:46:03
