StabilityOverlap-class(GeneSelector)
StabilityOverlap-class()所属R语言包：GeneSelector
"StabilityOverlap"
“StabilityOverlap”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
An object returned from a call to GetStabilityOverlap.
对象返回从一个调用GetStabilityOverlap到。
插槽----------Slots----------
intersection: A matrix of intersection counts, normalized such that 1 is the maximum attainable value. The rows correspond to the positions in the list such that row i contains the number of common elements of two lists up to position i. The columns correspond to lists, either obtained from altered datasets or by applying multiple
intersection：一个交点计数的矩阵，规范化，1是可达到的最高值。该行对应列表中的位置，这样行i包含两个列表的共同要素的数量定位i。列对应列表，无论是从改变数据集或应用多个获得
overlapscore: A matrix of overlap scores, arranged analogously to intersection.
overlapscore：安排类似于intersection重叠的分数，一个矩阵。
noinformation: A list containing two numeric vectors named "intersection" and "overlap score" containing for each list position intersection counts and overlap scores one would expect in the no-information case, corresponding to the random generation of
noinformation：一个列表，其中包含命名"intersection"和"overlap score"包含为每个列表中的位置相交数和重叠的分数，希望在没有资料的情况下，相应的随机生成两个数字向量
scheme s. GetStabilityOverlap.
scheme的。 GetStabilityOverlap。
decay The decay scheme used for the weights, s. GetStabilityOverlap.
decay用于重量的衰变纲图。 GetStabilityOverlap。
方法----------Methods----------
show Use show(object) for brief information.
显示使用简要信息show(object)。
summary Use summary(object), measure = c("overlapscore", "intersection"), display = c("summary", "all"), position, digits = 3 for condensed output. The argument measure specifies the measure one is interested in. The argument display controls whether only a five-point summary is printed (display = "summary") or whether all results are printed (display = "all"). The argument position specifies the list position, e.g. if position = 10, then intersection counts/overlap scores up to position 10 are summarized. The argument digits is used for number
总结使用summary(object), measure = c("overlapscore", "intersection"), display = c("summary", "all"), position, digits = 3简明输出。参数measure指定的措施之一是英寸的论点display只有五点总结是否打印控制（display = "summary"）或是否所有的结果都印（display = "all"感兴趣）。参数position指定列表中的位置，例如：如果position = 10，然后交点计数/重叠分数高达10的位置进行了总结。用于数量的参数digits
plot plot(object, frac=1/50, mode = c("mean", "all", "specific"), which = 1, ...) produces a graphical display of the intersection count (upper panel) and the overlap score (lower panel) for increasing list position, ranging from 1 to frac*number of genes. The argument mode specifies whether this is done as average over all lists (mode = "mean"), for a certain alternative list which (mode = "specific") or succesively in the form of separate plots for each alternative list (mode = "all"). The ... argument may be used to modify
图plot(object, frac=1/50, mode = c("mean", "all", "specific"), which = 1, ...)增加列表中的位置产生的交点计数（上图）和重叠的得分（下部面板）的图形显示，从1frac*number of genes不等。参数模式指定这是否是对所有列出的平均（mode = "mean"），有一定的替代列表which（mode = "specific"），或succesively在单独图的形式为每个备选名单（mode = "all"）。 ...参数，可以用来修改
作者（S）----------Author(s)----------
Martin Slawski <br>
Anne-Laure Boulesteix
参考文献----------References----------
Assessing stability of gene selection in microarray data analysis. BMC Bioinformatics 7, 50
Similarities of ordered gene lists. Journal of Bioinformatics and Computational Biology 4, 693-708
OrderedList - a Bioconductor package for detecting similarity in ordered gene lists.
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-25 19:05:14
