createFlowReport(flowFlowJo)
createFlowReport()所属R语言包:flowFlowJo
Produce a denormalized data frame of summary statistics and other information on a set of FlowJo gated FCS files
生产一套FlowJo门的FCS文件的汇总统计数据和其他信息的规格化数据框
译者:生物统计家园网 机器人LoveR
描述----------Description----------
This method produces a data frame that has one row per cell population per FCS file per channel for one or more FCS files as gated using the commercial software, FlowJo.
这种方法产生的数据框有一个或多个功能界别门使用的商业软件,FlowJo文件的每一个单元,每FCS每通道文件人口一行。
用法----------Usage----------
createFlowReport(summaryList, ...)
参数----------Arguments----------
参数:summaryList
a flowFlowJo object that is a list of data structures providing many bits of summary information about each gated population in a gated FCS file. See also collectSummaryFlowInfo
1 flowFlowJo对象,这是一个数据结构,提供了许多位的门,每个门的FCS文件人口的汇总信息的列表。也collectSummaryFlowInfo
参数:...
Additional factors detailed below.
下文详述的其他因素。
Details
详情----------Details----------
Additional arguments also include the following:
额外的参数还包括以下内容:
值----------Value----------
The collectSummaryFlowInfo method produces a large and complicated data structure that tracks every FCS file location, gate structure, compensation matrix, as well as the summary statistics for every file referenced in a FlowJo workspace. This method, createFlowReport distills out a simple data frame of the summary statistics that is convenient and easy to read, plot, and otherwise analyze.
collectSummaryFlowInfo方法产生一个大而复杂的数据结构,跟踪每个FCS的文件的位置,门结构,补偿矩阵,以及为每一个文件了FlowJo工作区引用的汇总统计。这种方法,createFlowReport提炼出一个简单的汇总统计数据是方便和易于阅读,图,否则分析的框架。
作者(S)----------Author(s)----------
John Gosink
举例----------Examples----------
library(flowFlowJo);
demoLocation <- system.file("extdata", "DemoWorkspace.wsp", package="flowFlowJo");
actualFCSLoc <- system.file("extdata/fcsFiles", package="flowFlowJo");
testList <- readFlowJoList(demoLocation, altFileLocation=actualFCSLoc);
# This next statement may take a few moments to run as it is parsing through a FlowJo workspace[下一个语句可能需要几分钟的时间运行,因为它是通过FlowJo工作空间解析]
# and two dozen FCS files...[二十几FCS的文件...]
summaryStatsObj <- collectSummaryFlowInfo(testList);
# And here are some of the summary statistics for this workspace[这里有一些汇总统计这个工作区]
flowReport <- createFlowReport(summaryStatsObj);
head(flowReport);
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注:
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