R语言 ChIPpeakAnno包 annotatedPeak()函数中文帮助文档(中英文对照)

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annotatedPeak(ChIPpeakAnno)
annotatedPeak()所属R语言包：ChIPpeakAnno

                                         Annotated Peaks
                                         注明峰

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

TSS annotated putative STAT1-binding regions that are identified in un-stimulated cells using ChIP-seq technology (Robertson et al., 2007)
TSS的注释假定STAT1的约束力的区域，在未刺激单元识别使用SEQ芯片技术（罗伯逊等。，2007）


用法----------Usage----------


data(annotatedPeak)



格式----------Format----------

RangedData with slot start holding the start position of the peak, slot end holding the end position of the peak, slot rownames holding the id of the peak and slot space holding the chromosome location where the peak is located. In addition, the following variables are included.
与插槽RangedData开始举行的高峰期的开始位置，槽年底举行的高峰期的结束位置，槽rownames控股的峰值和峰位于染色体上的位置槽空间的ID。此外，包括下列变量。




feature id of the feature such as ensembl gene ID
featureID的功能，如ENSEMBL基因ID




insideFeature upstream: peak resides upstream of the feature; downstream: peak resides downstream of the feature; inside: peak resides inside the feature; overlapStart: peak overlaps with the start of the feature; overlapEnd: peak overlaps with the end of the feature; includeFeature: peak include the feature entirely
insideFeature上游：高峰的功能所在的上游，下游：下游，高峰所在的功能;内：高峰内部功能所在; overlapStart：高峰重叠功能开始; overlapEnd：年底的高峰重叠包括功能完全功能; includeFeature：高峰




distancetoFeature distance to the nearest feature such as transcription start site
distancetoFeature距离最近的功能，如转录起始位点




start_position start position of the feature such as gene
start_position起始位置的功能，如基因




end_position end position of the feature such as the gene
end_position结束位置的功能，如基因




strand 1 for positive strand and -1 for negative strand where the feature is located
strand正股和1负链-1的功能位于


Details

详情----------Details----------

obtained by  data(TSS.human.GRCh37) data(myPeakList) annotatePeakInBatch (myPeakList, AnnotationData = TSS.human.GRCh37, output="b",,multiple=F)
获得数据（TSS.human.GRCh37）annotatePeakInBatch（myPeakList，AnnotationData = TSS.human.GRCh37，输出=“B”，多= F的数据（myPeakList））


举例----------Examples----------


data(annotatedPeak)
str(annotatedPeak)
if (interactive()) {
y = annotatedPeak$distancetoFeature[!is.na(annotatedPeak$distancetoFeature)]
hist(as.numeric(as.character(y)), xlab="Distance To Nearest TSS", main="", breaks=1000,
ylim=c(0, 50), xlim=c(min(as.numeric(as.character(y)))-100,
max(as.numeric(as.character(y)))+100))
}

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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