R语言 cosmo包 intInfo-class()函数中文帮助文档(中英文对照)

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intInfo-class(cosmo)
intInfo-class()所属R语言包：cosmo

                                        Class "intInfo" ~~~
                                         类“intInfo”的~~~

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

An object of class "intInfo" contains all the constraints one wishes to impose on an interval of the motif.   Combined "intInfo" objects will constitue an object of class
"intInfo"类的对象包含了所有的约束，一是要对图案的间隔。结合"intInfo"对象constitue类对象


类的对象----------Objects from the Class----------

Objects can be created by calls of the form    new('intInfo',<br>     constraintID      = ...., # Object of class \code{"numeric"}<br>     intervalID        = ...., # Object of class \code{"numeric"}<br>     type      = ...., # Object of class \code{"character"}<br>     length    = ...., # Object of class \code{"numeric"}<br>     prop      = ...., # Object of class \code{"numeric"}<br>     boundedCon        = ...., # Object of class \code{"data.frame"}<br>     posFreqConCon     = ...., # Object of class \code{"data.frame"}<br>     shapeCon  = ...., # Object of class \code{"data.frame"}<br>     objectCall        = ...., # Object of class \code{"call"}<br>   )
可以创建对象调用的形式  new('intInfo',参考    constraintID      = ...., # Object of class \code{"numeric"}参考    intervalID        = ...., # Object of class \code{"numeric"}参考    type      = ...., # Object of class \code{"character"}参考    length    = ...., # Object of class \code{"numeric"}参考     prop      = ...., # Object of class \code{"numeric"}参考    boundedCon        = ...., # Object of class \code{"data.frame"}参考    posFreqConCon     = ...., # Object of class \code{"data.frame"}参考    shapeCon  = ...., # Object of class \code{"data.frame"}参考    objectCall        = ...., # Object of class \code{"call"}参考  )


插槽----------Slots----------




constraintID: Object of class "numeric",
constraintID：Object类的"numeric"，




intervalID: Object of class "numeric",
intervalID：Object类的"numeric"，




type: Object of class "character", the interval
type类"character"，间隔对象




length: Object of class "numeric", the length of the interval: if the interval is of type 'B', the length is the number of base pairs, if the      
length：类对象"numeric"，长度的间隔时间：如果时间间隔是“B”型，长度是个碱基对的数量，如果




prop: Object of class "numeric", the ratio of the interval lengtb to the total motif width. This slot is only defined for intervals of type 'P', in which case       the value is between 0 and 100%. For intervals of type 'B' or
prop：对象类"numeric"，间隔lengtb的主题总宽度的比例。此插槽只能定义为类型“P”，在这种情况下，该值是0和100％之间的间隔。对于类型为B或间隔




boundedCon: Object of class "data.frame" a data frame summarizing the information content bounding constraints on the interval: the first column indicates the position of the interval among the intervals constituing the constraint set, the second and third column are respetively the lower and upper bound
boundedCon：Object类的"data.frame"一个数据框总结边界上的时间间隔限制的信息内容：第一列表示的约束集constituing之间的间隔的时间间隔的位置，列第二和第三respetively的上下限




posFreqCon: Object of class "data.frame" a data frame summarizing the position nucleotide frequency constraints imposed on the interval: the first column indicates the interval to which the constraint is applied, the second column the position concerned ('All' cab be specified if the constraint applies to the entire interval). It is to be noted that a specific position mat only be specified if the interval is of type 'B'. The third column is the nucleotide concerned, either A, C, G, T, AT, or GC are accepted at this time. Finally the fourth column indicates the
posFreqCon：Object类的"data.frame"一个数据框总结位置的核苷酸频率间隔的制约：第一列表示约束应用的时间间隔，第二列的位置有关（“所有“驾驶室被指定约束适用于整个区间）。这是必须指出，一个特定的位置垫指定的时间间隔是“B”型。第三列是有关各方，无论是A，C，G，T，或GC此时接受核苷酸。最后，第四列表示




shapeCon: Object of class "data.frame" a data frame summarizing the shape constraint on the interval. The first column indicates the interval to which the constraint is applied, the second the shape of the variation either 'linear', 'monotone decreasing', or 'monotone increasing'. The third and fourth column (respectively fifth and sixth) record the lower and upper bounds of the information content at the beginning (respectively end) of the interval. Finally, the seventh column records the error
shapeCon：Object类的"data.frame"一个数据框，总结间隔的形状约束。第一列表示约束应用的时间间隔，第二个形状的变化是线性，减少，或单调递增，单调。第三和第四列（分别为第五和第六届），在开始的间隔（分别月底）记录的信息内容的上限和下限。最后，第七栏记录错误




objectCall: Object of class "call" stores how
objectCall类"call"商店对象如何


方法----------Methods----------




plot signature(x = "intInfo", varLen=4, propLen=4,       plot.IC=TRUE, plot.nucFreq=TRUE): plots the "intInfo" object. varLen and propLen are integers indicating how wide to make the variable and proportion intervals (1 unit is one base pair).     plot.IC and plot.nucFreq are logicals respectively indicating whether the IC content and the nucleotide frequencies are to be
图signature(x = "intInfo", varLen=4, propLen=4,       plot.IC=TRUE, plot.nucFreq=TRUE)：图"intInfo"对象。 varLen和propLen整数表示有多宽，使变量和比例的时间间隔（1个单位是一个碱基对）。 plot.IC和plot.nucFreq是逻辑值分别表示是否在IC内容和核苷酸频率是


作者（S）----------Author(s)----------



Fabian Gallusser, <a href="mailto:fgallusser@berkeley.edu">fgallusser@berkeley.edu</a>




参见----------See Also----------

writeConFile,
writeConFile

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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