R语言 cosmo包 align-class()函数中文帮助文档(中英文对照)

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align-class(cosmo)
align-class()所属R语言包：cosmo

                                        Class "align"
                                         类“调整”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

An object of class "align" summarizes the motif occurrences that were predicted by cosmo. For each predicted motif occurrence, it contains the sequences on which the site was found, the position on that sequence, the orientation of the motif (1 if found on the forward strand, -1 otherwise), the site itself, as well as the posterior probability of a motif occurrence at that site.
一个对象类"align"总结主题由cosmo预测出现。每个预测的图案出现，它包含的网站上发现的序列，该序列上的位置，图案的方向（1，如果发现链的前进，否则返回-1），该网站本身，以及在该网站的主题发生后验概率。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form new("align", ...).
创建对象可以通过检测的形式new("align", ...)。


插槽----------Slots----------




seq: Object of class "numeric" The sequences on
seq类"numeric"序列的对象




pos: Object of class "numeric" The starting
pos：Object类的"numeric"开始




orient: Object of class "numeric" The orientation in which each motif was discovered: 1 for the forward strand
orient：对象类"numeric"被发现在每个主题的方向：1的正链




motif: Object of class "character" The site
motif：对象类"character"网站




prob: Object of class "numeric" The posterior
prob：Object类的"numeric"后




eval: Object of class "numeric" The E-value of
eval：Object类的"numeric"的E-值


方法----------Methods----------




summary signature(object = "align",...) Prints the discovered motifs along with the sequences they were discovered on, the starting positions, the strand, and the posterior probability of a motif occurrence at this
总结signature(object = "align",...)打印沿线发现的图案中，他们发现，起始位置，钢绞线的序列和后验概率的一个主题发生在此




print signature(x = "align",...) Prints the discovered motifs along with the sequences they were discovered on, the starting positions, the strand, and the posterior probability of a motif occurrence at this
打印signature(x = "align",...)打印他们发现，起始位置，链，和一个主题出现在这个后验概率的序列，发现图案




show signature(object = "align") Prints the discovered motifs along with the sequences they were discovered on, the starting positions, the strand, and the posterior probability of a motif occurrence at this
显示signature(object = "align")他们发现，起始位置，链，和一个主题出现在这个后验概率的序列，发现图案打印


作者（S）----------Author(s)----------


Oliver Bembom, <a href="mailto:bembom@berkeley.edu">bembom@berkeley.edu</a>

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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