out.stat(wgaim)
out.stat()所属R语言包:wgaim
Plot the interval outlier statistics from
绘制的时间间隔离群统计
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Plots the interval outlier statistics for specified iterations of wgaim. The interval statistics appear as a trace across the genome separated by chromosome and appropriately spaced by their distances.
绘制的时间间隔为指定wgaim迭代的离群统计。间隔的统计信息显示为一个跟踪整个基因组的染色体分离和适当间隔的距离。
用法----------Usage----------
out.stat(object, intervalObj, int = TRUE, iter = NULL, chr = NULL, ...)
参数----------Arguments----------
参数:object
object of class "wgaim"
类的对象“wgaim。”
参数:intervalObj
object of class "cross" or "interval"
类的对象“cross”或“interval”
参数:int
logical value, if TRUE then plot interval outlier statistics. If FALSE then plot chromosome outlier statistics. This cna only be done if the analysis method for the object was "fixed"
逻辑值,如果TRUE图间隔离群统计。如果FALSE图染色体异常值统计。这中央社只能这样做,如果为对象的分析方法是“fixed”
参数:iter
numeric value determining which iterations will be plotted
数值确定哪些迭代将被绘制
参数:chr
character string naming the subset of chromosomes to plot. This can only be used when int is TRUE
字符串命名的子集染色体图。这只能用时int是TRUE
参数:...
arguments passed to "xyplot" or "barchart" (with some restrictions, see Details)
参数传递给“xyplot”或“barchart”(有一些限制,详细)
Details
详细信息----------Details----------
By default the interval outlier statistics are plotted in separate panels for each iteration in a set layout of 5 rows and one column. This cannot be adjusted and users should not attempt to use the layout argument. Viewing multiple pages can be done by specifying the appropriate iterations using the iter argument.
缺省情况下的时间间隔离群值统计绘制在单独的板的每一次迭代中的5行和一列设置布局。这可以不作调整,用户不应该尝试使用layout参数。 iter使用参数指定适当的迭代,可以通过查看多个页面。
The set of QTL are obtained from the model and printed on the plot in their appropriate positions in each panel.
从模型中获得的QTL,并印在其适当的位置,在每块面板的图。
值----------Value----------
The outlier statistics are plotted in a trellis panel plot.
离群值的统计资料绘制在网格面板图。
(作者)----------Author(s)----------
Julian Taylor
参考文献----------References----------
Bi-Parental Populations Using Linear Mixed Models. Journal of Statistical Software, 40(7), 1-18. URL http://www.jstatsoft.org/v40/i07/.
参见----------See Also----------
tr.wgaim, wgaim
tr.wgaim,wgaim
实例----------Examples----------
## Not run: [#不运行:]
# fit wgaim model[适合wgaim模型]
zn.qtl <- wgaim(zn.fm, phenoData = zinc, intervalObj = raccas,
merge.by = "id", trace = "trace.txt", na.method.X = "include")
# plot QTL interval outlier statistics[图QTL区间离群统计]
out.stat(zn.qtl, raccas, iter = 1:5, cex = 0.4)
## End(Not run)[#(不执行)]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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