summarizeReplicates(cellHTS2)
summarizeReplicates()所属R语言包：cellHTS2
Summarize between scored replicate values given in a cellHTS object to obtain a single value for each probe
总结之间打进在cellHTS对象的复制值，获得每个探针的单值
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This function summarizes the replicate values stored in slot assayData of a cellHTS object and calculates a single score for each probe. Data are stored in slot assayData overridding its current content.
此功能总结插槽中存储的复制值assayDatacellHTS对象的，并计算出每个探针的单节得分。数据存储在插槽assayData的overridding其当前内容。
Currently this function is implemented only for single-color data.
目前此功能只为单一颜色的数据。
用法----------Usage----------
summarizeReplicates(object, summary ="min")
参数----------Arguments----------
参数：object
an object of class cellHTS that has already been normalized and scored (see details).
一个类的对象cellHTS已经标准化，并取得（见详情）。
参数：summary
a character string indicating how to summarize between replicate measurements. One of "min" (default), "mean", "median", "max", "rms", "closestToZero", or "FurthestFromZero" can be used (see details).
一个字符串，指示如何总结之间的重复测量。一个“分”（默认），“是什么意思”，“中位数”，“最大”，“RMS”，“closestToZero”，或“FurthestFromZero”可以使用（见详情）。
Details
详情----------Details----------
A single value per probe is calculated by summarizing between scored replicates stored in the slot assayData of object. The summary is performed as follows:
每个探针的一个单值的计算方法之间的刻痕总结存储插槽assayDataobject复制。摘要如下：
If summary="mean", the average of replicate values is considered;
如果summary="mean"，被认为是重复值的平均值;
If summary="median", the median of replicate values is considered;
如果summary="median"，被认为是重复值的中位数;
If summary="max", the maximum of replicate intensities is taken;
如果summary="max"，复制强度最大;
If summary="min", the minimum is considered, instead;
如果summary="min"，被认为是最低的，而不是;
If summary="rms", the square root of the mean squared value of the replicates (root mean square) is taken as a summary function;
如果summary="rms"，平均的重复平方值（均方根）的平方根作为汇总函数;
If summary="closestToZero", the value closest to zero is taken as a summary (useful when both sides of the distribution of z-score values are of interest);
如果summary="closestToZero"，最接近零值摘要（Z-得分值的分布时双方的利益是有益的）;
If summary="furthestFromZero", the value furthest from zero is taken as a summary (useful when both sides of the distribution of z-score values are of interest).
如果summary="furthestFromZero"，最远的从零值被视为摘要（Z-得分值的分布时双方的利益是有益的）。
值----------Value----------
The cellHTS object with the summarized scored values stored in slot assayData. This is an object of class assayData corresponding to a single matrix of dimensions Features x 1. Moreover, the processing status of the cellHTS object is updated
cellHTS汇总刻痕值存储在插槽assayData对象。这是一个类assayData到一个单一尺寸特点×1矩阵对应的对象。此外，处理cellHTS对象的状态更新
作者（S）----------Author(s)----------
W. Huber <a href="mailto:huber@ebi.ac.uk">huber@ebi.ac.uk</a>, Ligia Bras <a href="mailto:ligia@ebi.ac.uk">ligia@ebi.ac.uk</a>
参考文献----------References----------
参见----------See Also----------
normalizePlates, summarizeChannels, scoreReplicates, imageScreen.
normalizePlates，summarizeChannels，scoreReplicates，imageScreen。
举例----------Examples----------
data(KcViabSmall)
# normalize[标准化]
x <- normalizePlates(KcViabSmall, scale="multiplicative", method="median", varianceAdjust="none")
# score the replicates[得分复制]
x <- scoreReplicates(x, sign="-", method="zscore")
# summarize the replicates (conservative approach: take the minimum value between replicates)[总结的复制（保守的做法：取最低值之间的复制）]
x <- summarizeReplicates(x, summary="min")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 14:19:11
