LinearMParams-class(Category)
LinearMParams-class()所属R语言包：Category
Class "LinearMParams"
类“LinearMParams”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
A parameter class for representing all parameters needed by a method specializing the linearMTest generic.
一个代表linearMTest通用的方法由专业所需要的所有参数的参数类。
类的对象----------Objects from the Class----------
Objects can be created by calls of the form
可以通过检测的形式创建对象
插槽----------Slots----------
geneStats: Named vector of class "numeric", giving the gene-level statistics to be used in the tests. The
geneStats：命名类"numeric"给在基因水平在测试中使用的统计数据，矢量。 “
universeGeneIds: Object of class "ANY": A vector of gene ids defining a subset of the gene ids on the chip that will be used as the universe for the hypergeometric calculation. If this is NULL or has length zero, then all gene ids on the chip will be used. Currently this parameter is
universeGeneIds：Object类的"ANY"：一个向量基因IDS的定义上的芯片将使用超几何计算宇宙的基因标识的一个子集。如果这是NULL或已长度为零，然后在芯片上所有基因的IDS将使用。目前，这个参数是
annotation: A string giving the name of the
annotation：一个字符串，给出的名称
datPkg: Object of class "DatPkg" used to assist with dispatch based on type of annotation data available. Currently this parameter is ignored by the
datPkg：Object类的"DatPkg"使用，以协助调度的基础上可用的注释数据类型。目前，这个参数被忽略
categorySubsetIds: Object of class "ANY": If the test method supports it, can be used to specify a subset of category ids to include in the test instead of all possible category ids. Currently this parameter is ignored by the
categorySubsetIds：Object类的"ANY"：如果测试方法支持它，可以用来指定一个类别ID的子集，包括在测试，而不是所有可能的类别ID。目前，这个参数被忽略
categoryName: A string describing the category. Usually set automatically by subclasses. For example
categoryName：一个描述类的字符串。一般自动设置子类。例如
pvalueCutoff: The p-value to use as a cutoff for significance for testing methods that require it. This value will also be passed on to the result instance and used for display and
pvalueCutoff：P-值测试方法需要它作为一个重要的截止使用。此值也将被传递到的结果实例，用于显示和
minSize: An integer giving a minimum size for a gene
minSize：一个整数，一个基因的最小尺寸
testDirection: A string indicating whether the test should test for systematic increase ("up") or decrease ("down") in the geneStats values within a gene set
testDirection：一个字符串，指示测试是否应该测试系统增加（"up"）或减少"down"值（geneStats）在基因组
graph: The graph object indicating the hierarchical relationship among terms of the ontology or other grouping.
graph：graph对象表示本体或其他分组之间的层次关系。
conditional: A logical indicating whether conditional tests should be performed. This tests whether a term is still significant even when including its sub-terms in the model.
conditional：logical指示是否应进行条件测试。此测试是否术语仍然是重要的，即使其子项包括在模型。
gsc: The GeneSetCollection object grouping the gene ids into sets.
gsc：GeneSetCollection对象组合成集基因标识。
方法----------Methods----------
These are accessor methods for the various parameter slots:
这些都是为各种参数插槽存取方法：
annotation<- signature(object = "LinearMParams", value = "character"): ...
注释< - signature(object = "LinearMParams", value = "character")...
annotation signature(object = "LinearMParams"): ...
注释signature(object = "LinearMParams")：...
categoryName signature(r = "LinearMParams"): ...
类别名称signature(r = "LinearMParams")...
conditional signature(r = "LinearMParams"): ...
有条件的signature(r = "LinearMParams")：...
geneIds<- signature(object = "LinearMParams"): ...
geneIds < - signature(object = "LinearMParams")...
geneIds signature(object = "LinearMParams"): ...
geneIdssignature(object = "LinearMParams")...
pvalueCutoff<- signature(r = "LinearMParams"): ...
pvalueCutoff < - signature(r = "LinearMParams")...
pvalueCutoff signature(r = "LinearMParams"): ...
pvalueCutoffsignature(r = "LinearMParams")：...
show signature(object = "LinearMParams"): ...
显示signature(object = "LinearMParams")：...
testDirection<- signature(r = "LinearMParams"): ...
testDirection < - signature(r = "LinearMParams")...
testDirection signature(r = "LinearMParams"): ...
testDirectionsignature(r = "LinearMParams")：...
conditional<- signature(r = "LinearMParams"): ...
有条件< - signature(r = "LinearMParams")...
conditional signature(r = "LinearMParams"): ...
有条件的signature(r = "LinearMParams")：...
universeGeneIds signature(r = "LinearMParams"): ...
universeGeneIdssignature(r = "LinearMParams")...
作者（S）----------Author(s)----------
Deepayan Sarkar, Michael Lawrence
参见----------See Also----------
See linearMTest for examples. ChrMapLinearMParams is a specialization of this class for chromosome maps.
看到linearMTest的例子。 ChrMapLinearMParams是一个专业化的这一类染色体图谱。
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
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发表于 2012-2-25 14:10:37
