R语言 CAMERA包 xsAnnotate-class()函数中文帮助文档(中英文对照)

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xsAnnotate-class(CAMERA)
xsAnnotate-class()所属R语言包：CAMERA

                                        Class xsAnnotate, a class for annotated peak data
                                         xsAnnotate类，一类注释的峰值数据

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class transforms a xcmsSet object with peaks from multiple LC/MS or GC/MS samples into a set of annotation results. It contains searching algorihms for isotopes and adducts, peak grouping algorithms to find connected peak, which originate from the same molecule.
这个类转换多个LC / MS或GC / MS分析样品一组注释结果峰xcmsSet对象。它包含的搜索algorihms同位素及加合物，高峰分组算法来寻找连接的高峰期，从同一分子。


类的对象----------Objects from the Class----------

Objects can be created with the xsAnnotate constructor which include the peaktable from a provided xcmsSet. Objects can also be created by calls of the form new("xsAnnotate", ...).
可创建xsAnnotate构造，其中包括从提供的xcmsSetpeaktable的对象。对象也可以通过检测的形式new("xsAnnotate", ...)创建。


插槽----------Slots----------




annoGrp: Assignment of mass hypotheses to correlation groups
annoGrp：大规模的假设分配给相关团体




annoID: The assignemnt of peaks to the mass difference rule used
annoID：峰assignemnt质量差规则




derivativeIons: List with annotation result for every peak
derivativeIons：注解结果为每高峰名单




formula: Matrix containing putative sum formula (intended for future use)
formula：矩阵包含假定的求和公式（供将来使用的）




isoID: Matrix containing IDs and additional of all annotated isotope peaks
isoID：矩阵包含ID和附加注明所有同位素峰




groupInfo: (grouped) Peaktable with "into" values
groupInfo：（分组）与“成”的价值观Peaktable




isotopes: List with annotated isotopid results for every peak
isotopes：每峰注明isotopid结果名单




polarity: A single string with the polarity mode of the peaks
polarity：峰极性模式的一个单一的字符串




pspectra: List contains all pseudospectra with there peak IDs
pspectra：列表包含了所有与有峰的ID伪谱




psSamples: List containing information with sample was sample was selecteted as representative (automatic selection)
psSamples：名单含有样品信息样品selecteted代表（自动选择）




ruleset: A dataframe describing the mass difference rules used for the annotion
ruleset：dataframe描述群众规则差异的annotion使用




runParallel: Flag if CAMERA runs in serial or parallel mode
runParallel：国旗，如果相机在串行或并行模式下运行




sample: Number of the used xcmsSet sample (beforehand sample selection)
sample：使用xcmsSet样本数（事前样本选择）




xcmsSet: The embedded xcmsSet
xcmsSet：的嵌入式xcmsSet的


方法----------Methods----------

signature(object = "xsAnnotate"): group the peak data after the FWHM of the retention time
signature(object = "xsAnnotate")：A组的保留时间后的半高宽的峰值数据

signature(object = "xsAnnotate"): group the peak data after the correlation of the EICs
signature(object = "xsAnnotate")：组后的EICs的相关性的峰值数据

signature(object = "xsAnnotate"): search for possible isotopes in the spectra
signature(object = "xsAnnotate")：寻找可能的同位素在光谱

signature(object = "xsAnnotate"): search for possible adducts in the spectra
signature(object = "xsAnnotate")：光谱中寻找可能的加合物

signature(object = "xsAnnotate"): plot EICs of pseudospectra
signature(object = "xsAnnotate")：伪谱图EICs


注意----------Note----------

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作者（S）----------Author(s)----------


Carsten Kuhl, <a href="mailto:ckuhl@ipb-halle.de">ckuhl@ipb-halle.de</a>



参见----------See Also----------

xsAnnotate
xsAnnotate

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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