MultiSet(Biobase)
MultiSet()所属R语言包:Biobase
Class to Contain and Describe High-Throughput Expression Level Assays.
类来包含并说明高通量表达水平检测。
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Container for high-throughput assays and experimental metadata. MutliSet is derived from eSet-class. MultiSet differs from ExpressionSet-class because MultiSet can contain any element(s) in assayData (ExpressionSet must have an element named exprs).
高通量的检测和试验的元数据的容器。 MutliSet来自eSet-class。 MultiSet不同于ExpressionSet-class因为MultiSet可以包含任何元素(S)assayData(ExpressionSet必须有一个元素命名为exprs)。
延伸----------Extends----------
Directly extends class eSet.
直接延伸类eSet。
创建对象----------Creating Objects----------
new('MultiSet', phenoData = [AnnotatedDataFrame], experimentData = [MIAME], annotation = [character], protocolData = [AnnotatedDataFrame], ...)
new('MultiSet', phenoData = [AnnotatedDataFrame], experimentData = [MIAME], annotation = [character], protocolData = [AnnotatedDataFrame], ...)
updateOldESet(oldESet,"MultiSet")
updateOldESet(oldESet,"MultiSet")
MultiSet instances are usually created through new("MultiSet", ...). The ... arguments to new are matrices of expression data (with features corresponding to rows and samples to columns), phenoData, experimentData, annotation, and protocolData. phenoData, experimentData, annotation, and protocolData can be missing, in which case they are assigned default values.
MultiSet实例通常是创建new("MultiSet", ...)。参数...new表达数据矩阵(与功能对应的行和列样品),phenoData,experimentData,annotation, protocolData。 phenoData,experimentData,annotation,protocolData可以丢失,在这种情况下,他们被分配默认值。
updateOldESet will take a serialized instance (e.g., saved to a disk file with save object created with earlier definitions of the eSet-class, and update the object to MultiSet. Warnings are issued when direct translation is not possible; incorrectly created oldESet instances may not be updated.
updateOldESet将一个序列化的实例(例如,与save与eSet-class早期的定义创建的对象保存到磁盘文件,并更新对象MultiSet警告。时发出的直接翻译是不可能的;错误地创建oldESet实例可能无法更新。
插槽----------Slots----------
Inherited from eSet:
继承自eSet
assayData: Contains zero or more matrices with equal dimensions, and with column number equal to nrow(phenoData). Each matrix in assayData has rows representing features (e.g., reporters) and columns representing
assayData:包含零个或更多的维数相同的矩阵,列数等于nrow(phenoData)。每个assayData矩阵行代表功能(如记者)和列代表
phenoData: See eSet-class
phenoData:见eSet-class
experimentData: See eSet-class
experimentData:见eSet-class
annotation: See eSet-class
annotation:见eSet-class
protocolData: See eSet-class
protocolData:见eSet-class
方法----------Methods----------
Class-specific methods: none
类的具体方法:无
Derived from eSet-class:
来自eSet-class:
updateObject(object, ..., verbose=FALSE) Update instance to current version, if necessary. See updateObject and eSet
updateObject(object, ..., verbose=FALSE)实例更新到当前版本,如果有必要的。看到updateObject和eSet
isCurrent(object) Determine whether version of object is current. See isCurrent
isCurrent(object)确定对象是否是最新的版本。看到isCurrent
isVersioned(object) Determine whether object contains a 'version' string describing its structure . See isVersioned
isVersioned(object)确定是否对象包含一个版本字符串,来描述它的结构。看到isVersioned
sampleNames(MultiSet) and sampleNames(MultiSet)<-: See eSet-class
sampleNames(MultiSet)和sampleNames(MultiSet)<-:见eSet-class
featureNames(MultiSet), featureNames(MultiSet, value)<-: See eSet-class
featureNames(MultiSet),featureNames(MultiSet, value)<-:见eSet-class
dims(MultiSet): See eSet-class
dims(MultiSet):见eSet-class
phenoData(MultiSet), phenoData(MultiSet,value)<-: See eSet-class
phenoData(MultiSet),phenoData(MultiSet,value)<-:见eSet-class
varLabels(MultiSet), varLabels(MultiSet, value)<-: See eSet-class
varLabels(MultiSet),varLabels(MultiSet, value)<-:见eSet-class
varMetadata(MultiSet), varMetadata(MultiSet,value)<-: See eSet-class
varMetadata(MultiSet),varMetadata(MultiSet,value)<-:见eSet-class
pData(MultiSet), pData(MultiSet,value)<-: See eSet-class
pData(MultiSet),pData(MultiSet,value)<-:见eSet-class
varMetadata(MultiSet), varMetadata(MultiSet,value) See eSet-class
varMetadata(MultiSet),varMetadata(MultiSet,value)eSet-class
experimentData(MultiSet),experimentData(MultiSet,value)<-: See eSet-class
experimentData(MultiSet),experimentData(MultiSet,value)<-:见eSet-class
pubMedIds(MultiSet), pubMedIds(MultiSet,value) See eSet-class
pubMedIds(MultiSet),pubMedIds(MultiSet,value)eSet-class
abstract(MultiSet): See eSet-class
abstract(MultiSet):见eSet-class
annotation(MultiSet), annotation(MultiSet,value)<- See eSet-class
annotation(MultiSet),annotation(MultiSet,value)<-eSet-class
protocolData(MultiSet), protocolData(MultiSet,value)<- See eSet-class
protocolData(MultiSet),protocolData(MultiSet,value)<-eSet-class
combine(MultiSet,MultiSet): See eSet-class
combine(MultiSet,MultiSet):见eSet-class
storageMode(eSet), storageMode(eSet,character)<-: See eSet-class
storageMode(eSet),storageMode(eSet,character)<-:见eSet-class
Standard generic methods:
标准的通用方法:
initialize(MultiSet): Object instantiation, used by new; not to be called directly by the user.
initialize(MultiSet):对象实例化,使用new不被由用户直接调用。
validObject(MultiSet): Validity-checking method, ensuring that all elements of assayData are matricies with equal dimensions.
validObject(MultiSet):有效性检查方法,确保assayData所有元素与同等尺寸的基质中。
as(eSet,MultiSet): Coerce the eSet portion of an object to MultiSet.
as(eSet,MultiSet):强迫eSetMultiSet对象部分。
show(MultiSet) See eSet-class
show(MultiSet)见eSet-class
dim(MultiSet), ncol See eSet-class
dim(MultiSet),ncoleSet-class
MultiSet[(index): See eSet-class
MultiSet[(index):见eSet-class
MultiSet$, MultiSet$<- See eSet-class
MultiSet$,MultiSet$<-eSet-class
作者(S)----------Author(s)----------
Biocore team
参见----------See Also----------
eSet-class, ExpressionSet-class
eSet-class,ExpressionSet-class
举例----------Examples----------
# create an instance of ExpressionSet[创建的ExpressionSet实例]
new("MultiSet")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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