readMicroRnaAFE(AgiMicroRna)
readMicroRnaAFE()所属R语言包：AgiMicroRna
Read Agilent Feature Extraction txt data files
阅读安捷伦特征提取txt数据文件
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Read the data files generated by the Agilent Feature Extraction image analysis software
安捷伦特征提取的图像分析软件读取数据生成的文件
用法----------Usage----------
readMicroRnaAFE(targets,verbose=FALSE)
参数----------Arguments----------
参数：targets
A data frame that specifies experimental conditions under which each sample has been obtained.
一个指定实验条件下，每个样品已获得的数据框。
参数：verbose
logical, if TRUE prints out output
逻辑，如果TRUE打印出输出
Details
详情----------Details----------
The function reads the *.txt files generated by the AFE Software using the 'read.maimages' function of 'limma' package.
该函数读取*。AFE的软件使用“read.maimages”功能“limma包生成的txt文件。
Data, colected with the Agilent Feature Extraction Software, are stored in a uRNAList object with the following components:
colected安捷伦特征提取软件，数据，存储在以下组件uRNAList对象：
- dd.micro\$TGS 'gTotalGeneSignal' - dd.micro\$TPS 'gTotalProbeSignal' - dd.micro\$meanS 'gMeanSignal' - dd.micro\$procS 'gProcessedSignal' - dd.micro\$targets 'targets' - dd.micro\$genes\$ProbeName 'Probe Name' - dd.micro\$genes\$GeneName 'microRNA Name' - dd.micro\$genes\$ControlType 'FLAG to specify the sort of feature' - dd.micro\$other\$gIsGeneDetected 'FLAG IsGeneDetected' - dd.micro\$other\$gIsSaturated 'FLAG IsSaturated' - dd.micro\$other\$gIsFeatNonUnifOL 'FLAG IsFeatNonUnifOL' - dd.micro\$other\$gIsFeatPopnOL 'FLAG IsFeatPopnOL' - dd.micro\$other\$gBGMedianSignal 'gBGMedianSignal' - dd.micro\$other\$gBGUsed 'gBGUsed'
- dd.micro \ $ TGS的gTotalGeneSignal - dd.micro \ $租置计划“gTotalProbeSignal - dd.micro \ $意味着”gMeanSignal - dd.micro \ $特效“gProcessedSignal - dd.micro \ $目标目标 \ $ GeneName“的microRNA名称” - dd.micro \ $ ProbeName\ $基因探针名称“中 - dd.micro \ $基因 - dd.micro \ $基因\ $的ControlType指定排序的功能 - DD标志。 \ $ \ $ gIsGeneDetected标志IsGeneDetected“的微 - dd.micro \ $ \ $ gIsSaturated”标志IsSaturated中 - dd.micro \ $ \ $ gIsFeatNonUnifOL标志IsFeatNonUnifOL“的中 - dd.micro \ $ \ $ gIsFeatPopnOL”濠江IsFeatPopnOL - dd.micro \ $ \ $ gBGMedianSignal“gBGMedianSignal” - dd.micro \ $ \ $ gBGUsed gBGUsed“
值----------Value----------
A uRNAList containing the following elements:
一个uRNAList包含以下内容：
参数：uRNAList\$TGS
matrix, 'gTotalGeneSignal'
矩阵，“gTotalGeneSignal”，
参数：uRNAList\$TPS
matrix, 'gTotalProbeSignal'
矩阵，“gTotalProbeSignal”，
参数：uRNAList\$meanS
matrix, 'gMeanSignal'
矩阵，“gMeanSignal”，
参数：uRNAList\$procS
matrix, 'gProcessedSignal'
矩阵，“gProcessedSignal”，
参数：uRNAList\$targets
data.frame, 'FileName'
数据框，文件名
参数：uRNAList\$genes\$ProbeName
character, 'AGilent Probe Name'
字符，安捷伦探针名称“
参数：uRNAList\$genes\$GeneName
character, 'microRNA Name'
字符microRNA的名称
参数：uRNAList\$genes\$ControlType
integer, '0'= Feature, '1'= Positive control, '-1'= Negative control
整数，0=功能，1=阳性对照，-1=阴性对照
参数：uRNAList\$other\$gIsGeneDetected
matrix, FLAG to classify signal if 'IsGeneDetected=1' or 'not=0'
矩阵，信号标志分类，如果“IsGeneDetected = 1或= 0”
参数：uRNAList\$other\$gIsSaturated
matrix, FLAG to classify signal if 'IsSaturated = 1' or 'not=0'
矩阵，分类标志的信号，如果“IsSaturated = 1或= 0”
参数：uRNAList\$other\$gIsFeatPopnOL
matrix, FLAG to classify signal if 'IsFeatPopnOL = 0' or 'not=1'
矩阵，信号标志分类如果IsFeatPopnOL= 0或不= 1
参数：uRNAList\$other\$gIsFeatNonUnifOL
matrix, FLAG to classify signal if 'gIsFeatNonUnifOL = 0' or 'not=1'
矩阵，信号标志分类如果gIsFeatNonUnifOL= 0或不= 1
参数：uRNAList\$other\$gBGMedianSignal
matrix, gBGMedianSignal
矩阵，gBGMedianSignal
参数：uRNAList\$other\$gBGUsed
matrix, gBGUsed
矩阵，gBGUsed
作者（S）----------Author(s)----------
Pedro Lopez-Romero
参考文献----------References----------
http://www.Agilent.com
'Bioinformatics and Computational Biology Solutions using R and Bioconductor'. R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber (eds), Springer, New York, pages 397–420.
参见----------See Also----------
A data example can be found in dd.micro See also readTargets to see how to build the target file and the example given in targets.micro
数据的例子可以发现在dd.micro又见readTargets来看看如何生成目标文件，例如targets.micro
举例----------Examples----------
## Not run: [＃无法运行：]
data(targets.micro)
dd.micro = readMicroRnaAFE(targets.micro)
## End(Not run)[＃结束（不运行）]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 11:39:24
