ILM-class(affyILM)
ILM-class()所属R语言包：affyILM
Class to contain the results of an ilm calculation
一类包含一个ILM计算的结果
译者：生物统计家园网 机器人LoveR
描述----------Description----------
S4 object to contain intensities, probe concentrations, annotations, and summarized expression values.
中S4中的对象，包含强度，探针浓度，注释，总结表达式的值。
插槽----------Slots----------
Ipm: A "matrix" of size (number of probes) x (number of CEL-files). Each columns corresponds to one CEL-file with the raw PM.
Ipm：一个"matrix"大小（探针数）×（CEL文件数）。每列对应一个CEL的文件与原始的下午。
I0: A "matrix" of size 1x1 or (number of probes) x (number of CEL-files). In the current release, I0 is set to 0 (default value). In the future releases, I0 will include estimates of background intensities.
I0：一个"matrix"尺寸1X1或（探针数）×（CEL文件数）。在当前版本中，I0被设置为0（默认值）。 ，I0在未来的版本中，将包括背景强度的估计。
probe.concs: A "matrix" of size (number of probes) x (number of CEL-files) holding the concentration for each probe (picoMolar) computed according to the Langmuir model.
probe.concs：一个"matrix"大小（探针数）×（CEL文件的数量）每个探针的浓度（皮摩尔）根据Langmuir模型计算。
exprSummary: A "list" with 1 slots, Probe.Set and Cluster.Set, each containing either NA of a matrix of size (number of sets) x (number of CEL-files). Each slot has been included to provide summarized expression values (using medianpolish or transposed medianpolish), computed at the level of Probe Sets (old and new generation arrays), or Cluster Sets (only for whole gene arrays, if probe table contains "Cluster.Set.Name" definition, added manually)
exprSummary：1插槽。一个“"list"，Probe.Set和Cluster.Set，每个都包含任matrix大小（套）×不适用（数CEL文件）。已被列入每个插槽提供总结表达式的值（使用medianpolish或调换medianpolish的），在探针组（新老一代阵列）的水平计算，或簇集（仅适用于整个基因阵列，如果探针表中包含<X >的定义，手动添加）
se.exprSummary: A "list" with 1 slots, Probe.Set and Cluster.Set, each containing either NA of a matrix of size (number of sets) x (number of CEL-files). Each slot has been included to provide standard deviation estimates for summarized expression values, computed for each Probe Set (old and new generation arrays), or Cluster Set (only for whole gene arrays, if probe table contains "Cluster.Set.Name" definition, added manually)
se.exprSummary：1插槽。一个“"list"，Probe.Set和Cluster.Set，每个都包含任matrix大小（套）×不适用（数CEL文件）。已被列入每个插槽提供汇总表达式值的标准偏差估计，每个探针设置（新老一代阵列），或聚类设置（仅适用于整个基因阵列计算，如果探针表包含"Cluster.Set.Name"的定义，添加手动）
satLim: Is the "numeric" saturation limit of the intensities of the Langmuir Isotherm, i.e. where the concentration is high or the probe-target binding free energies are large. The default value of A is 10000.
satLim是"numeric"Langmuir吸附等温线，即浓度高或结合自由能的探测目标是大强度的饱和极限。 A默认值是10000。
deltaG.pm: A "matrix" providing the DNA-RNA hybridization free energies (deltaG) computed for each PM probe sequence.
deltaG.pm："matrix"提供DNA-RNA杂交自由能（deltaG）计算每个PM探针序列。
deltaGp.pm: A "matrix" providing the RNA-RNA hybridization free energies (deltaG) for each PM probe sequence.
deltaGp.pm："matrix"为每个PM探针序列的RNA-RNA杂交自由能（deltaG）。
info: A "list" containing several annotations : "ncol" and "nrow" provide the chip dimensions, "cdfName" provides information on the array model,"pmindex" contains the indices of the probes together with the name of the Probe Set, "alpha" is a matrix with intermediate value used by the Langmuir Model (used by the function plotILM), and "probe.table" contains the probe annotation table.
info："list"包含几个注释："ncol"和"nrow"提供了芯片尺寸，"cdfName"阵列模式提供的信息，"pmindex"包含探针与探针的名称一起的指标设置，"alpha"是一个中间值由Langmuir模型（函数使用plotILM），"probe.table"包含的矩阵探测注释表。
方法----------Methods----------
[ Subset ILM objects
[子集的ILM对象
getIntens Get background intensity (of a particular probe set)
getIntens获取背景强度（一个特定的探针集）
getProbeConcs Get probes concentrations in pM
getProbeConcs获取探针浓度在下午
getExprSummary Get summarized expression values
getExprSummary获取概括的表达值
getSDSummary Get estimates for summarized expression values
getSDSummary获取总结表达式的值估计
plotIntens Plot probe intensities of selected probe set
plotIntens探针强度选定的探针集图
plotILM Plot Langmuir Isotherm for selected probe set
对选定的探针集plotILM图Langmuir吸附等温
作者（S）----------Author(s)----------
Myriam Kroll, Fabrice Berger and Enrico Carlon
举例----------Examples----------
showClass("ILM")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
|
发表于 2012-2-25 11:16:15
