KEGG数据库 FTP介绍

genechip

KEGG数据库中FTP连接，以及这些链接所在文件夹的内容。用户应根据自己研究方向，选取不同的文件夹内容。

KEGG FTPKEGG FTP Site for Academic UsersThe KEGG data may be downloaded by academic users from the KEGG FTP site:

ftp://ftp.genome.jp/pub/kegg/

Non-academic users are required to obtain a license agreement for downloading KEGG.

• Terms of use
• Licensing from Pathway Solutions
  

Announcement: A new directory, "module", is created. Posted on December 22, 2010    » Past announcements

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Directories and Files

	pathway/			KEGG PATHWAY (daily updated)
		map/		Reference pathway maps
		ko/		Reference pathway maps (KO)
		ec/		Reference pathway maps (EC)
		rn/		Reference pathway maps (reaction)
		organisms/		Organism-specific pathway maps
		pathway		Pathway entries (text data)
		map_title.tab		List of pathways available
	module/			KEGG MODULE (daily updated) New!
		ko/		Reference module maps (KO) - to be added
		organisms/		Organism-specific module maps - to be added
		module		Module entries (text data)
	brite/			KEGG BRITE (daily updated)
		ko/		BRITE hierarchies for KO
		br/		BRITE hierarchies for the other categories
		jp/		BRITE hierarchies for the other categories in Japanese
		organisms/		BRITE hierarchies for organisms (converted from KO)
	genes/			KEGG GENES (daily updated except oc)
		ko		KEGG ORTHOLOGY (KO) database
		genome		KEGG GENOME database
		taxonomy		List of organisms
		organisms/		KEGG GENES database with manual (KOALA) annotation
		organisms_new/		New data for KEGG GENES in preparation (no annotation)
		organisms_draft/		KEGG DGENES database with automatic (KAAS) annotation
		organisms_est/		KEGG EGENES database with automatic (KAAS) annotation
		fasta/		FASTA sequence files for GENES, DGENES, and GENOME databases
		oc/		KEGG OC: ortholog clusters computationally generated from KEGG SSDB (updated a few times per month)
	ligand/			KEGG LIGAND (daily updated)
		compound/		KEGG COMPOUND database
		glycan/		KEGG GLYCAN database
		reaction/		KEGG REACTION database
		rpair/		KEGG RPAIR database
		rclass/		KEGG RCLASS database
		enzyme/		KEGG ENZYME database
		ligand_update.lst		Update status of C/D/G entries
	medicus/			KEGG MEDICUS (daily updated)
		disease		KEGG DISEASE database
		drug/		KEGG DRUG database
		edrug		KEGG EDRUG database
	xml/			XML files of KEGG pathways (daily updated)
		kgml/		KGML (KEGG Markup Language) format files
		kgml+/		KGML+ format file for the global map
	release/			All of the above (weekly updated)
	software/			KegTools

Last updated: December 22, 2010

又爱又恨的统计

谢谢分享{:soso_e128:}