yaqc.plot(yaqcaffy)
yaqc.plot()所属R语言包：yaqcaffy
Plots a YAQCStats object
绘制YAQCStats对象
译者：生物统计家园网 机器人LoveR
描述----------Description----------
S4 method to plot an YAQCStats object. plot(object) generates a visual summary of the various Affymetrix QC statistics.
中S4中的方法来绘制一个YAQCStats对象。 plot(object)产生视觉的各种Affymetrix公司的QC统计总结。
用法----------Usage----------
yaqc.plot(YAQCStatsObject, which=c("all","sfs","avbg","avns","pp","gapdh","actin","bio","spikes"), ...)
参数----------Arguments----------
参数：YAQCStatsObject
An object of class YAQCStats.
对象类YAQCStats。
参数：which
Which quality metrics should be plotted (all by default). See below for details.
应绘制的质量指标（所有默认）。细节见下文。
参数：...
Other arguments passed to the respective plot methods.
其他参数传递给各自的plot方法。
Details
详情----------Details----------
The quality control metrics of the YAQCStatsObject are plotted in a serie of graphs with the recommended ranges.
质量控制指标YAQCStatsObject在意甲图绘制与推荐范围。
The scale factors are represented through a dot chart and the upper and lower limits are defined with vertical red lines. The other qc metircs are shown using dot plots. For the upper row box plots (average background, average noise, percent present and β-actin and GAPDH ratios, the mean is represented by a dashed red line and the mean +/- 2 stdev by red dotted lines. For the lower box plots, featuring the internal controls, grey boxes defines the mean (middle segment) +/- 2 stdev.
规模因素的代表通过一个点图和红色垂直线定义的上限和下限的限制。 “的其他QC metircs的是使用点图所示。对于上排箱线图（平均背景下，平均噪声，％，目前和β-actin和GAPDH的比值，平均虚线红线，平均+ / - 2 STDEV由红色虚线代表较低的方块图，特色的内部控制，灰框定义的平均（中段）+ / - 2 STDEV。
Individual plots can also be generated with the which argument: 'sfs' for the scale factor, 'avbg' and 'avns' for the average background and noise, 'pp' for the percentage of present calls, 'gapdh' and 'actin' for the GAPDH and β-actin ratios, 'bio' for the hybridization controls and 'spikes' for the retro-transciption spiked controls.
个别图也可以生成which的说法：“SFS”为尺度因子，avbg“和”avns平均背景噪音，目前通话的百分比的“PP”，“GAPDH” “肌动蛋白GAPDH和β-肌动蛋白的比例为，”生物“杂交控制和”尖峰“为的复古transciption尖刺控制。
If the YAQCStatsObject has been generated with an Expression Set objects, the scale factors, average noise and background and percent present can not be computed and the respective plots are removed from the final graph.
如果在YAQCStatsObject已生成一个表达式设置对象，规模因素，平均噪声和背景％，目前不能进行计算和各自的图是从最终的图形中删除。
作者（S）----------Author(s)----------
Laurent Gatto
举例----------Examples----------
## load data[＃加载数据]
library(affydata)
data(Dilution)
## create the yaqc object[＃创建yaqc对象。]
## and plot it[＃和绘制]
qobj <- yaqc(Dilution)
plot(qobj)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-26 16:17:12
