TDARACNE(TDARACNE)
TDARACNE()所属R语言包：TDARACNE
TDARACNE
TDARACNE
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Main function, see P. Zoppoli, S. Morganella, M. Ceccarelli. TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach. BMC Bioinformatics 2010, 11:154.
主要功能，见P. Zoppoli，S.摩，M.切卡莱利。 TimeDelay ARACNE：逆向工程从信息理论方法的时间，当然数据的基因网络。 BMC的生物信息学2010，11:154。
用法----------Usage----------
TDARACNE(eSet,N,delta=3,likehood=1.2,norm=2,logarithm=1,thresh=0,ksd=1,tolerance=0.15,plot=FALSE,dot=FALSE,name="youHaveForgottenIt",adj=FALSE)
参数----------Arguments----------
参数：eSet
eSet is the ExpressionSet object
ESET是ExpressionSet对象
参数：N
N is respectively the number of bins in percentile normalization or in rank normalization
N是分别在百分排名标准化标准化或箱
参数：delta
delta is the maximum time delay allowed to infer connections
Delta是最大允许延迟时间来推断连接
参数：likehood
likehood is the fold change used as threshold to state the initial change expression (IcE)
似然是褶皱的变化，作为阈值用来说明，初步改变了表达（ICE）
参数：norm
if you want column percentile normalization put norm == 1; if you want Rank normalization put norm == 2;
如果你想列百分标准化提出规范== 1，如果你想排名标准化提出规范== 2;
参数：logarithm
if z is log put logarithm == 0;
如果z是log把对数== 0;
参数：thresh
the Influence threshold. if you have a threshold and a SD put them here in this format: c(thresh,SD) if you don't have threshold put 0 in thresh;
影响阈值。如果你有一个阈值，一个SD他们把这种格式在这里：C（阈值，SD）如果你没有阈值把阈值0;
参数：ksd
ksd is the standard deviation multiplier;
KSD是标准差倍增;
参数：tolerance
tolerance is the DPI tolerance; 0 means no tolerance 1 means no DPI 0.15 is the default ARACNE tolerance as it is for TDARACNE
宽容是DPI容忍; 0表示不容忍1意味着没有DPI的0.15是默认ARACNE的宽容，因为它是TDARACNE
参数：plot
plot must be TRUE to obtain automatically the graph
图必须是TRUE自动获得图
参数：dot
dot must be TRUE to obtain a .dot file
点必须是真实的获得。dot文件
参数：name
name must be written with quotation marks(like this:'examplename') and is the name of the .dot file produced;
名称必须用引号（如：“examplename）书面点生成的文件的名称;
参数：adj
adj must be TRUE to obtain an adjacent matrix
形容词必须是TRUE获得邻接矩阵
举例----------Examples----------
## take paper data[＃走纸数据]
library(TDARACNE)
data(dataIRMAon)
data(threshIRMAon)
## main function; in output gives to you and adj matrix and a .dot file[＃的主要功能;输出给你和形容词矩阵和点文件。]
# eSet is the ExpressionSet object[ESET是ExpressionSet对象]
# N is respectively the number of bins in percentile normalization or in rank normalization[N是分别在百分排名标准化标准化或箱]
# delta is the maximum time delay allowed to infer connections[Delta是最大允许延迟时间来推断连接]
# likehood is the fold change used as threshold to state the initial change expression (IcE) [似然是褶皱的变化，作为阈值用来说明，初步改变了表达（ICE）]
# if you want column percentile normalization put norm == 1;[如果你想列百分标准化提出规范== 1;]
# if you want Rank normalization put norm == 2;[如果你想排名标准化把规范== 2;]
# if z is log put logarithm == 0;[如果z是log把对数== 0;]
# if you don't have threshold put 0 in thresh;[如果你没有阈值阈值0;]
# ksd is the standard deviation multiplier;[KSD是标准差倍增;]
# tolerance is the DPI tolerance;[宽容是DPI的耐受性;]
# plot must be TRUE to obtain automatically the graph[图必须是TRUE自动获得图]
# dot must be TRUE to obtain a .dot file [点必须是真实的获得。dot文件]
# name must be written with quotation marks(like this:'examplename') and is the name of the .dot file produced;[名称必须用引号（如：“examplename）书面点生成的文件的名称;]
# adj must be TRUE to obtain an adjacent matrix[形容词必须是TRUE获得邻接矩阵]
TDARACNE(dataIRMAon,11,"netIRMAon",delta=3,likehood=1.2,norm=2,logarithm=1,thresh=threshIRMAon,ksd=0,tolerance=0.15);
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-26 15:27:34
