dSLAM.GPL1444(SLGI)
dSLAM.GPL1444()所属R语言包：SLGI
dSLAM platform used for Synthetic Lethal screens in the Boeke Lab
DSLAM平台用于在Boeke实验室合成致死屏幕
译者：生物统计家园网 机器人LoveR
描述----------Description----------
These data are the 21991 probes spotted on the dSLAM array (heterozygote diploid-based synthetic lethality analyzed by microarray) used to test synthetic lethal interactions by Pan et al (2006).
这些数据是21991探针发现DSLAM上的阵列，用于测试由潘等人（2006年）的合成致命的相互作用（杂合子二倍体的合成致死基因芯片分析）。
用法----------Usage----------
data(dSLAM.GPL1444)
data(dSLAM)
格式----------Format----------
dSLAM.GPL1444 is a data frame with 21991 observations on the following 10 variables.
dSLAM.GPL1444是21991以下的10个变量的观测数据框。
ID Serial identifier for probe.
ID探针的序列标识符。
ROW Row number in the array as scanned with GenePix scanner.
ROW数组中的行数与GenePix扫描仪扫描。
COLUMN Column number in the array as scanned with GenePix scanner.
COLUMN数组的列数与GenePix扫描仪进行扫描。
TAGTYPE Code for whether tag is 5' (Up) or 3' (Dn) relative to the open reading frame (ORF).
TAGTYPE是否标签是5守则“（向上）或3（DN）的开放阅读框（ORF）。
PROBE Code for singleton probes arrayed in ORF order (ArrA, ArrB), five-fold replicate probes arrayed in randomized order (Rpts), systematic mutations arrayed across the center of the array (Muts), negative controls (NegT), or probes peripheral to the array as specified by the manufacturer (Edge)
PROBE（ARRA，ARRB）在ORF的顺序排列的单身探针的代码，探针在随机顺序排列（RPTS）五倍复制，系统突变摆着整个阵列的中心（MutS蛋白），阴性对照（NegT）或外围设备制造商指定的阵列探针（边）
ORF Systematic ORF name (from SGD, Feb 2003) (http://genome-www4.stanford.edu/cgi-bin/SGD/locus.pl?locus=
ORF系统的ORF（新元，2003年2月）的名称（http://genome-www4.stanford.edu/cgi-bin/SGD/locus.pl?locus =
GENE Standard gene name (SGD) (or ORF if not available)
GENE标准的基因名称（新元）（或框如果不提供）
SEQUENCE DNA sequence of probe (includes custom-designed sequences for 193 YA* and YM* ORFs missing DnTags)
SEQUENCE探针的DNA序列（包括193遐*和ym * ORFS失踪DnTags定制设计的序列）
SGDID Unique ORF identifier from SGD; 'S000000000' denotes missing value
SGDID独特的ORF标识符新元;“S000000000”表示缺失值
SPOT_ID spot identifier; ('YQL' ORFs denote custom-designed sequences; 'NegA', 'NegB', 'PosA', 'PosB' denote proprietary sequences specified by the manufacturer)
SPOT_ID点标识符（YQL的“的ORF表示定制设计的序列;负，NegB”，“波萨”，“储蓄银行”指由制造商指定的专有序列）
dSLAM is a character vector of length 5641 that contains the unique and valid systematic ORF names.
DSLAM是一个长度为5641，包含独特而有效的系统的ORF名称的字符向量。
Details
详情----------Details----------
The dSLAM.GPL1444 were directly obtain from parsing the GPL1444\_family.soft.gz available at http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL1444
的dSLAM.GPL1444直接获得在http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL1444解析在GPL1444 \ _family.soft.gz
dSLAM is a vector of length 5641, extracted from the dSLAM.GPL1444 ORF, and that contains the unique and valid systematic ORF names. This vector was built in three steps. First the ORFs with SGDID equals to S000000000 in the dSLAM.GPL1444 data frame were removed as some correspond to custom sequences and other were dubious ORFs that have been deleted from SGD or merged with other ORFs. Secondly, the duplicated names were removed. Then, the systematic ORF names were verified against the YEAST data package.
DSLAM是一个向量，从dSLAM.GPL1444的ORF全长5641提取，并包含独特而有效的系统的ORF名称。这个向量，建立在三个步骤。第一S000000000在SGDID等于的dSLAM.GPL1444数据框的ORF被拆除，一些对应新元，已被删除或合并其他的ORF的自定义序列和其他可疑的ORF。其次，重复的名字被拆除。然后，系统ORF名称进行了核实，对酵母的数据包。
源----------Source----------
The data were extracted from the Gene Expression Omnibus (GEO) website: http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL1444
数据分别提取基因表达的综合（GEO）的网站：http://www.ncbi.nlm.nih.gov/projects/geo/query/acc.cgi?acc=GPL1444
参考文献----------References----------
A DNA integrity network in the yeast Saccharomyces cerevisiae. Cell. 2006 Mar 10;124(5):1069-81
参见----------See Also----------
Boeke2006raw, and
Boeke2006raw，
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-26 14:27:11
