R语言 simpleaffy包 QCStats-class()函数中文帮助文档(中英文对照)

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QCStats-class(simpleaffy)
QCStats-class()所属R语言包：simpleaffy

                                        Class "QCStats"
                                         类“QCStats”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Holds Quality Control data for a set of Affymetrix arrays
拥有一套Affymetrix公司的阵列的质量控制数据


类的对象----------Objects from the Class----------

Objects can be created by calls of the form qc(AffyBatch).
创建对象可以通过检测的形式qc(AffyBatch)。


插槽----------Slots----------




scale.factors: Object of class "numeric" Scale factors used to scale the chips to the specified target intensity
scale.factors类"numeric"用于扩展芯片到指定的目标强度规模因素：对象




target: Object of class "numeric" The target intensity to which the chips were scaled
target：Object类的"numeric"目标强度的芯片缩放




percent.present: Object of class "numeric" Number of genes called present
percent.present类"numeric"基因数目的对象调用




average.background: Object of class "numeric" The average background for the arrays
average.background：对象类"numeric"阵列的平均背景




minimum.background: Object of class "numeric" The minimum background for the arrays
minimum.background：对象类"numeric"阵列的最低背景




maximum.background: Object of class "numeric"
maximum.background类"numeric"：对象




bioBCalls: Object of class "character" The detection PMA (present / marginal / absent) calls of bioB spike-in
bioBCalls：Object类的"character"检测PMA（现在/ /无边际）调用穗中的bioB




spikes: Object of class "list" spiked in probes (e.g. biob, bioc...)
spikes：对象类"list"飙升探针（如biob，bioc ...）




qc.probes: Object of class "list" qc probes
qc.probes：对象类"list"QC探针




arraytype: The cdfName of the  AffyBatch object used to
arraytype：的cdfName对象AffyBatch用来


方法----------Methods----------




avbg signature(object = "QCStats"):  average background
avbgsignature(object = "QCStats")：平均背景




maxbg signature(object = "QCStats"): maximum background
maxbgsignature(object = "QCStats")：最大的背景




minbg signature(object = "QCStats"): minimum background
minbgsignature(object = "QCStats")：最低背景




spikeInProbes signature(object = "QCStats"): the spike-in QC probes
spikeInProbessignature(object = "QCStats")：QC穗探针




qcProbes signature(object = "QCStats"): the gapdh and actin QC probes
qcProbessignature(object = "QCStats")：GAPDH和肌动蛋白QC探针




percent.present signature(object = "QCStats"): no probesets called present
percent.presentsignature(object = "QCStats")：没有probesets称为本




plot signature(x = "QCStats"): Plot a QCStats object
图signature(x = "QCStats")：画出QCStats的对象




sfs signature(object = "QCStats"): scale factors
的SFSsignature(object = "QCStats")：规模因素




target signature(object = "QCStats"): target scaling
目标signature(object = "QCStats")：目标缩放




ratios signature(object = "QCStats"): 5'3' and 5'M
比signature(object = "QCStats")：53“和5M




arrayType signature(object = "QCStats"): The type of
arrayType的signature(object = "QCStats")：类型


作者（S）----------Author(s)----------


Crispin J Miller



参见----------See Also----------

qc
qc

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


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