找回密码
 注册
查看: 620|回复: 0

R语言 ScISI包 calcGraphStats()函数中文帮助文档(中英文对照)

[复制链接]
发表于 2012-2-26 13:52:35 | 显示全部楼层 |阅读模式
calcGraphStats(ScISI)
calcGraphStats()所属R语言包:ScISI

                                        A function to calculate the various summary statistics for Y2H
                                         酵母双杂交的一个函数来计算各种统计摘要

                                         译者:生物统计家园网 机器人LoveR

描述----------Description----------

This function takes a putative protein complex (given by comp) and a list of bait to prey associations, and from these two data-sets computes various summary statistics on the induced Y2H graph which include: edge proportion of sampled nodes (baits to prey); estimated population mean nodal degree; proportion of sampled baits with hits to baits with no hits; the average out degree of baits; the proteins (bait and prey) which are not isolated; the number of connected components to the y2h graph, etc.
这个函数需要一个假定的蛋白复合物(小样)和诱饵猎物协会的名单,这两个数据集的计算诱导酵母双杂交图,其中包括各种汇总统计:边采样节点的比例(对猎物的诱饵)人口估计平均节点度;采样命中没有命中诱饵诱饵的比例;出平均程度诱饵,诱饵和猎物的蛋白质()都不是孤立的;连接的元件数量Y2H图等


用法----------Usage----------


calcGraphStats(comp, bait2PreyL)



参数----------Arguments----------

参数:comp
The comp argument is a character vector containing the constituent proteins of some putative protein complex
comp参数是一个含有一些假定的蛋白复合物的组成蛋白质的特征向量


参数:bait2PreyL
A named list of lists. Each name represents a particular Y2H experiment; within each experimental entry, there is two more lists: 1. bpList and 2. expList. bpList is a named list of character vectors; each name corresponds to a bait protein of that particular experiment, and the enry is a chracater vecotor of the hit proteins found as prey. the expList is a named list concerning experimental data: ActD gives the activation domain; GW is a logical denoting if the prey list is genome wide; and numBaits details the number of baits used in the experiment.
命名的名单列表。每一个名字代表一个特定的酵母双杂交实验,在每个实验项目,有两个名单:1。 bpList和2。 expList。 bpList是一个特征向量的命名列表,每个名称对应到一个特定实验的诱饵蛋白,enry是chracater vecotor的命中猎物发现的蛋白质。 expList是一个命名的名单,有关实验数据:,ACTD给激活域; GW是一个逻辑的汉语表,如果猎物名单是全基因组和numBaits详细的实验中所用的诱饵。


Details

详情----------Details----------

For the bait2PreyL; use the the intactInfo.rda data-set of the package y2hStat.
对于在bait2PreyL;使用的数据包y2hStat设置intactInfo.rda。


值----------Value----------


参数:complex
A character vector of the constituent members of the proteinn complex of interest
一个成员的利益proteinn复杂的特征向量


参数:complexBait
A character vector of those protein members which were also tested as baits in the y2h experiments
一个向量,也为诱饵在Y2H实验测试这些蛋白质成员的性格


参数:b2CompP
A character vector of all proteins which were tested as baits in the y2h experiments and also found a prey in the complex of interest
的所有蛋白质为诱饵在Y2H实验测试和特征向量,还发现了一个复杂的利益猎物


参数:notBait
A character vector of those protein members which were not tested as baits
一个不作为诱饵测试这些蛋白质成员的特征向量


参数:avgDegOut
The average out-degree of the bait proteins of the complex of interest
平均出度复杂的利益诱饵蛋白


参数:notIsolated
A character vector of proteins that showed experimental binary affiliation for some other complex member
实验表明一些复杂的其他成员二进制联系的一种蛋白质的特征向量


参数:y2hGraph
An instance of the class graph; a graphNEL induceds Y2H graph on the protein complex
一个类图的实例; graphNEL induceds的Y2H对蛋白质复杂的图形


参数:popMeanDegree
The population mean degree derived from the bait proteins
来自诱饵蛋白的人口平均程度


参数:edgeProp
The estimated edge proportions derived between undirected Y2H edges
估计边缘之间无向的Y2H边缘的比例


参数:degBait
A named list; each name corresponds to each member of the protein complex with the entry the number of proteins to which it is adjacent
命名名单;条目,每个名字对应的蛋白复合物的每个成员的蛋白质的数量,它是相邻


作者(S)----------Author(s)----------


T Chiang

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注:
注1:为了方便大家学习,本文档为生物统计家园网机器人LoveR翻译而成,仅供个人R语言学习参考使用,生物统计家园保留版权。
注2:由于是机器人自动翻译,难免有不准确之处,使用时仔细对照中、英文内容进行反复理解,可以帮助R语言的学习。
注3:如遇到不准确之处,请在本贴的后面进行回帖,我们会逐渐进行修订。
回复

使用道具 举报

您需要登录后才可以回帖 登录 | 注册

本版积分规则

手机版|小黑屋|生物统计家园 网站价格

GMT+8, 2025-1-24 14:08 , Processed in 0.025327 second(s), 16 queries .

Powered by Discuz! X3.5

© 2001-2024 Discuz! Team.

快速回复 返回顶部 返回列表