R语言 RpsiXML包 psimi25Hypergraph-class()函数中文帮助文档(中英文对照)

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psimi25Hypergraph-class(RpsiXML)
psimi25Hypergraph-class()所属R语言包：RpsiXML

                                        Class "psimi25Hypergraph"
                                         类“psimi25Hypergraph”

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

Class to present PSI-MI 2.5 XML data as hypergraph. Proteins are projected as hypergraph nodes and complex
呈现超图PSI心梗2.5 XML数据的类。蛋白质预计超图的节点和复杂


类的对象----------Objects from the Class----------

Objects can be created by calls of the form psimi25XML2Graph
对象可以创建检测的形式psimi25XML2Graph


插槽----------Slots----------




interactors: Object of class "matrix", Object of class "matrix", interactor information in a matrix, Each row represents one interactor. Source IDs are used as row names. Each column represents one annotation.  Annotations include: UniProt ID, short label, organism name, and NCBI taxonomy ID. Only those interactors which are
interactors：，"matrix" Object类，Object类的"matrix"，关联信息矩阵中，每一行代表一个interactor。源ID被用作行名称。每一列代表一个注解。注解包括：UniProt编号，标签短，生物体的名称，和NCBI分类编号。这是只有那些团团员


延伸----------Extends----------

Class Hypergraph, directly
类Hypergraph，直接


方法----------Methods----------




initialize signature(.Object = "psimi25Hypergraph")
初始化signature(.Object = "psimi25Hypergraph")




show signature(object = "psimi25Hypergraph"): show
显示signature(object = "psimi25Hypergraph")：显示




interactors signature(object = "psimi25Hypergraph"): list of psimi25Interactor objects, providing full
团团员signature(object = "psimi25Hypergraph")：psimi25Interactor对象名单，提供全面的




edgeLabel signature(object = "psimi25Hypergraph"):
edgeLabelsignature(object = "psimi25Hypergraph")：




hyperedgeNodes signature(object = "Hypergraph"): returns a list of characters: names of the list are complex names and character vector in each
hyperedgeNodessignature(object = "Hypergraph")：返回一个字符列表：列表中的名称是复杂的名称，并在每个特征向量




complexes signature(object = "psimi25Hypergraph"):
配合物signature(object = "psimi25Hypergraph")：




translateSourceID signature(r = "psimi25Hypergraph"):
translateSourceIDsignature(r = "psimi25Hypergraph")：




numInteractors signature(r = "psimi25Hypergraph"):
numInteractorssignature(r = "psimi25Hypergraph")：




interactorInfo signature(r = "psimi25Hypergraph"):
interactorInfosignature(r = "psimi25Hypergraph")：




numEdges signature(r = "psimi25Hypergraph"):
numEdgessignature(r = "psimi25Hypergraph")：




revInciMat signature(r = "matrix"): returns the
revInciMatsignature(r = "matrix")：返回


作者（S）----------Author(s)----------


Tony Chiang <tchiang@ebi.ac.uk> , Jitao David Zhang <jitao_david.zhang@roche.com>



参见----------See Also----------

psimi25XML2Graph,S4classpsimi25Graph-class
psimi25XML2Graph，S4classpsimi25Graph-class


举例----------Examples----------


xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")
intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
pc1 <- buildPCHypergraph(intactComplexxml, INTACT.PSIMI25)

## print number of proteins and complexes (edges)[＃打印的蛋白质和复合物的数量（边）]
numNodes(pc1)
## the same as numInteractors(pc1)[＃一样numInteractors（PC1）]
numEdges(pc1)

## print proteins (nodes)[＃打印蛋白（节点）]
nodes(pc1)[1:3]

## print complex names[＃打印复杂的名字。]
edgeLabel(pc1)[1:3]

## print complexes (not so informative with 'hyperedges')[＃打印复合物（而不是与“超边”的信息）]
hyperedges(pc1)[1:3]
## better with 'complexes' or 'hyperedgeNodes'[＃更好的复合体或hyperedgeNodes“]
complexes(pc1)[1:3]

## get interactor detailed information[＃得到interactor详细信息。]
interactors(pc1)[[1]]

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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