probeAnno-class(Ringo)
probeAnno-class()所属R语言包：Ringo
Class "probeAnno"
类“probeAnno”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
A class that holds the mapping between reporters/probes on a microarray and their genomic match position(s) in a chosen
A类持有记者/探针之间的映射上的芯片和其基因组的比赛在选定的位置（S）
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("probeAnno", map, arrayName, genome).
创建对象可以通过检测的形式new("probeAnno", map, arrayName, genome)。
插槽----------Slots----------
map: Object of class "environment" This map consists of four vectors for each chromosome/strand, namely, say for chromosome 1:
map：Object类的"environment"本图由四个向量为每个染色体/股，即1号染色体的说：
1.start genomic start coordinates of probe matches on
1。启动基因组起始坐标探针比赛
1.end genomic start coordinates of probe matches on
1.end基因组起始坐标探针比赛
1.index identifier of probes matching at these
在这些配套探针1.index标识符
1.unique vector of the same length as the three before; encoding how many matches the corresponding probe has in the given file or data.frame. An entry of '0' indicates that the probe matching at this position has only this one
1，独特的矢量相同长度的前三个编码相应的探针在给定的文件或data.frame有多少匹配。 0的条目表明，在此位置匹配的探针只此一家
arrayName: Object of class "character", the name or identifier of the microarray design,
arrayName：Object类的"character"，名称或标识的芯片设计，
genome: Object of class "character", which
genome：Object类的"character"，这
方法----------Methods----------
arrayName obtain the microarray platform name
ARRAYNAME获得芯片平台名称
arrayName<- replace the microarray platform name
ARRAYNAME < - 更换芯片平台名称
[ get elements from the map environment
[map环境得到元素
[<- assign elements to the map environment
[< - map环境的分配要素
chromosomeNames obtain a character vector holding the names
chromosomeNames获得一个字符向量持有的名字
get get elements from the map environment
获得从map环境要素
initialize create mew probeAnno object
初始化创建MEW probeAnno对象
ls list elements of the map environment
LSmap环境的列表元素
genome obtain the description of the genome the reporters
基因组中获得的基因组记者描述
genome<- replace the description of the genome the reporters
基因组< - 取代基因组的记者描述
as signature(from="environment"); function to coerce old-style 'probeAnno' environments to new-style 'probeAnno' objects. Simply creates a new object with the old environment in
签名（从“环境”）;强迫旧式“probeAnno环境，以新风格”probeAnno“对象的功能。简单地创建一个新与旧的环境中的对象
注意----------Note----------
'probeAnno' objects used to be environments and still are used as
“probeAnno”对象用于环境仍然用作
作者（S）----------Author(s)----------
Joern Toedling; Wolfgang Huber
参见----------See Also----------
posToProbeAnno
posToProbeAnno
举例----------Examples----------
pa <- new("probeAnno")
pa["X.start"] <- seq(5000,10000,by=1000)
if (interactive()) show(pa)
pa2 <- posToProbeAnno(file.path(system.file("exData",package="Ringo"),
"MOD_2003-12-05_SUZ12_1in2.pos"))
arrayName(pa2) <- "NimbleGen MOD_2003-12-05_SUZ12_1in2"
genome(pa2) <- "H. sapiens (hg18)"
show(pa2)
head(pa2["9.start"])
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-26 12:58:50
