R语言 Repitools包 FastQC-class()函数中文帮助文档(中英文对照)

loveR

FastQC-class(Repitools)
FastQC-class()所属R语言包：Repitools

                                        FastQC and associated classes
                                         FastQC和相关类

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

The FastQC class stores results obtained from the FastQC application (see references), with a slot for each FastQC module. The SequenceQC class contains the QC results of a single lane of sequencing in three slots: Unaligned - FastQC results obtained from all reads (before alignment)  Aligned - FastQC results obtained from only reads which aligned Mismatches - a data.frame containing counts for the number of mismatches of each type found at each sequencing cycle   
FastQC类商店从FastQC应用取得的成果（见references），与每个FastQC模块插槽。 SequenceQC类包含一个单线测序三个插槽的QC成果：Unaligned - 所有读取（对齐）前获得FastQC结果Aligned -  FastQC结果只读取赞同<X获得> - Mismatches包含对每个类型的不匹配，在每个测序周期计数


插槽1 FastQC对象的----------Slots of a FastQC object----------

Basic_Statistics
Basic_Statistics

Per_base_sequence_quality
Per_base_sequence_quality

Per_sequence_quality_scores
Per_sequence_quality_scores

Per_base_sequence_content
Per_base_sequence_content

Per_base_GC_content
Per_base_GC_content

Per_sequence_GC_content
Per_sequence_GC_content

Per_base_N_content
Per_base_N_content

Sequence_Length_Distribution
Sequence_Length_Distribution

Sequence_Duplication_Levels
Sequence_Duplication_Levels

Overrepresented_sequences
Overrepresented_sequences


插槽1 SequenceQC对象的----------Slots of a SequenceQC object----------

Unaligned - FastQC results obtained from all reads (before alignment)
Unaligned - 所有读取的获得FastQC结果（前对齐）

Aligned - FastQC results obtained from only reads which aligned
Aligned - 从只获得FastQC结果读取赞同

Mismatches - a data.frame containing counts for the number of mismatches of each type found at each sequencing cycle
Mismatches - data.frame包含计数发现在每个测序周期的每个类型不匹配

MismatchTable - a data.frame containing counts of how many mismatches aligned sequences contain
MismatchTable - data.frame包含计数的多少不匹配对齐序列包含


作者（S）----------Author(s)----------


Aaron Statham



参考文献----------References----------

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。