flowPlate(plateCore)
flowPlate()所属R语言包:plateCore
Create a flowPlate
创建1 flowPlate
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Constructor for a flowPlate object. sampleNames for the flowSet should match the Well.Id column of wellAnnotation. Well.Ids must be unique to sampleNames, which is usually ensured by using the 3 character designations for wells (e.g. "A01","A02",...,"H12").
构造对象为flowPlate。 sampleNamesflowSet应匹配的wellAnnotationWell.Id列。 Well.Ids必须是独特的sampleNames,它通常使用3个字符的名称(如“A01”,“A02”,“H12”)井保证。
用法----------Usage----------
flowPlate(data,wellAnnotation,plateName,...)
参数----------Arguments----------
参数:data
flowSet object to be made into a flowPlate
flowSet反对将flowPlate
参数:wellAnnotation
data.frame describing the layout and contents of the flowPlate
data.frame描述flowPlate的布局和内容
参数:plateName
Name of the flowPate, should be unique within the set flowPlates under consideration
名称的flowPate,应该是唯一的内集flowPlates正在审议
参数:...
optional arguments
可选参数
值----------Value----------
Returns a flowPate object.
返回flowPate对象。
作者(S)----------Author(s)----------
Errol Strain
举例----------Examples----------
library(plateCore)
data(plateCore)
## Get the lymphocytes[#获取淋巴单元]
rectGate <- rectangleGate("FSC-H"=c(300,700),"SSC-H"=c(50,400))
pbmcPlate <- Subset(pbmcPlate, rectGate)
## Create a flowPlate object from the platePBMC and the wellAnnotation[#创建一个从“platePBMC flowPlate对象的wellAnnotation]
fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1")
## Subset the flowPlate, creating another flowPlate[#子集flowPlate,创造另一个flowPlate]
fpSmall <- fp["A01"]
## Extract a flowFrame from a flowPlate[#提取flowPlate flowFrame]
ff <-fp[["A01"]]
## Retrieve sample names from flowPlate[#检索从flowPlate的样本名]
sampNames <- sampleNames(fp)
## Retrieve the annotatedDataFrame describing the flowPlate[#描述的flowPlate检索annotatedDataFrame]
adf <- phenoData(fp)
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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