MIAPE-class(MSnbase)
MIAPE-class()所属R语言包：MSnbase
The "MIAPE" Class for Storing Proteomics Experiment Information
类存储蛋白质组学实验信息的的“MIAPE”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
The Minimum Information About a Proteomics Experiment. The current implementation is based on the MIAPE-MS 2.4 document.
关于蛋白质组学实验的最低限度的信息。目前的实现是基于2.4 MIAPE-MS文件。
插槽----------Slots----------
title: Object of class character containing a
title：Object类的character包含
abstract: Object of class character
abstract类character：对象
url: Object of class character containing a
url：Object类的character包含
pubMedIds: Object of class character listing
pubMedIds类character上市对象
samples: Object of class list containing
samples：Object类的list包含
preprocessing: Object of class list containing information about the pre-processing steps used on the raw data from
preprocessing类list包含有关前处理步骤，对原始数据信息的对象，从
other: Object of class list containing other
other：Object类的list含有其他
dateStamp: Object of class character, giving yhe date on which the work described was initiated; given in the
dateStamp：Object类的character，给工作描述yhe日期开始，在给定的
name: Object of class character containing the name of the (stable) primary contact person for this data set;
name：Object类的character含有（稳定），这组数据的主要联络人的名称;
lab: Object of class character containing the
lab：Object类的character包含
contact: Object of class character containing
contact：Object类的character包含
instrumentModel: Object of class character indicating the model of the mass spectrometer used to generate the
instrumentModel：Object类的character表示质谱仪模型用于生成
instrumentManufacturer: Object of class character indicating the manufacturing company of the mass
instrumentManufacturer类character说明制造公司的对象的质量
instrumentCustomisations: Object of class character describing any significant (i.e. affecting behaviour) deviations from the manufacturer's specification for the
instrumentCustomisationscharacter描述任何制造商的规格为重大偏差（即影响的行为）：对象类
softwareName: Object of class character with
softwareName：Object类的character
softwareVersion: Object of class character with
softwareVersion：Object类的character
switchingCriteria: Object of class character describing the list of conditions that cause the switch from survey or zoom mode (MS1) to or tandem mode (MSn where n > 1); e.g. 'parent ion” mass lists, neutral loss criteria and so on [applied for
switchingCriteria类character描述的情况，导致调查或变焦模式开关（MS1的）或串联模式的列表对象（MSN，其中n> 1）;如“母离子”群众名单，中性丢失标准等[申请
isolationWidth: Object of class numeric describing, for tandem instruments, the total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion
isolationWidth：类numeric描述串联工具，对象，围绕应用于选定的母离子门的总宽度（即不加或减一半）
parameterFile: Object of class character giving the location and name under which the mass spectrometer's parameter settings file for the run is stored, if available. Ideally this should
parameterFile：Object类的character质谱仪的运行参数设置文件存储的位置和名称，如果可用。理想情况下，这应该
ionSource: Object of class character describing
ionSource：Object类的character描述
ionSourceDetails: Object of class character describing the relevant details about the ion source. See MIAPE-MI docuement
ionSourceDetails：Object类的character描述离子源的有关详情。看到MIAPE心梗docuement
analyser: Object of class character describing
analyser：Object类的character描述
analyserDetails: Object of class character describing the relevant details about the analyser. See MIAPE-MI docuement
analyserDetails类character描述分析仪的有关详情的对象。看到MIAPE心梗docuement
collisionGas: Object of class character describing the composition of the gas used to fragment ions in the
collisionGas：Object类的character描述用于碎片离子气体成分在
collisionPressure: Object of class numeric
collisionPressure类numeric：对象
collisionEnergy: Object of class character specifying for the process of imparting a particular impetus to ions with a given m/z value, as they travel into the collision cell for fragmentation. This could be a global figure (e.g. for tandem TOF's), or a complex function; for example a gradient (stepped or continuous) of m/z values (for quads) or activation frequencies (for traps) with associated collision energies (given in eV). Note that collision energies are also provided for individual "Spectrum2" instances, and is the preferred
collisionEnergy：Object类的character指定传授特定的动力与一个给定的m / z值的离子的过程中，为他们的旅行碎片碰撞单元。这可能是1全球数字（例如串联飞行时间的），或一个复杂的函数，例如1的m / z值（为四边形）或相关的碰撞能量激活频率（陷阱）的梯度（阶梯式或连续）（定在EV）。请注意，碰撞能量也提供个人"Spectrum2"实例，是首选
detectorType: Object of class character describing the type of detector used in the machine (microchannel
detectorType：Object类的character描述类型的探测器，用于在本机（微
detectorSensitivity: Object of class character giving and appropriate measure of the sensitivity of the described
detectorSensitivity：Object类的character给予适当的措施所描述的敏感性
方法----------Methods----------
The following methods as in "MIAME":
"MIAME"下面的方法：
abstract(MIAPE): An accessor function for
abstract(MIAPE)：存取功能
expinfo(MIAPE): An accessor function for name,
expinfo(MIAPE)：name的存取功能，
notes(MIAPE), notes(MIAPE) <- value: Accessor functions for other. notes(MIAME) <- character appends character to notes; use notes(MIAPE) <- list
notes(MIAPE), notes(MIAPE) <- value：other的存取功能。 notes(MIAME) <- character追加字符的音符;使用notes(MIAPE) <- list
otherInfo(MIAPE): An accessor function for
otherInfo(MIAPE)：存取功能
preproc(MIAPE): An accessor function for
preproc(MIAPE)：存取功能
pubMedIds(MIAPE), pubMedIds(MIAME) <- value: Accessor
pubMedIds(MIAPE), pubMedIds(MIAME) <- value：存取
samples(MIAPE): An accessor function for
samples(MIAPE)：存取功能
MIAPE-specific methods, including MIAPE-MS meta-data:
MIAPE具体方法，包括MIAPE-MS元数据：
show(MIAPE): Displays the experiment data.
show(MIAPE)：显示的实验数据。
msInfo(MIAPE): Displays 'MIAPE-MS' information.
msInfo(MIAPE)：显示“MIAPE-MS的信息。
延伸----------Extends----------
Class "MIAxE", directly. Class "Versioned", by class "MIAxE", distance 2.
类"MIAxE"，直接。类"Versioned"，类“MIAxE”，距离为2。
作者（S）----------Author(s)----------
Laurent Gatto <lg390@cam.ac.uk>
参考文献----------References----------
references therein, especially 'Guidelines for reporting the use of mass spectrometry in proteomics', Nature Biotechnology 26, 860-861 (2008).
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-26 01:12:27
