MassArrayFragment-class(MassArray)
MassArrayFragment-class()所属R语言包：MassArray
Class "MassArrayFragment"
类“MassArrayFragment”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
A data structure containing information for a single fragment of an amplicon
一个数据结构包含一个单的扩增片段的信息
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("MassArrayFragment", ID, sequence, assay.name, name, position, type, direction, extra, bisulfite.converted, assayable, primer, ...).
创建对象可以通过检测的形式new("MassArrayFragment", ID, sequence, assay.name, name, position, type, direction, extra, bisulfite.converted, assayable, primer, ...)。
插槽----------Slots----------
ID: Unique integer indexing the fragment's position within a potential list of multiple fragments
ID：唯一的整数索引片段的位置内的多个片段的潜在名单
assay.name: (currently not supported)
assay.name：（目前不支持）
name: (currently not supported)
name：（目前不支持）
sequence: Bisulphite converted nucleotide sequence of fragment
sequence：亚硫酸氢转换片段的核苷酸序列
position: Relative position of fragment within the amplicon
position：在扩增片段的相对位置
length: Length (in bp) of fragment sequence
length：片段序列的长度（BP）
CpGs: Number of CG dinucleotides contained within the fragment
CpGs：重心核苷酸数目内包含的片段
MW: Predicted molecular weight(s) of fragment, including methylated and unmethylated mass, adducts, etc.
MW：预计分子量（S）的片段，包括甲基化和甲基化的质量，加合物，等。
collisions: Number of fragments that share the same molecular weight as the current fragment
collisions：当前片段相同分子量的碎片共享
collision.IDs: IDs of other fragments that share the same molecular weight as the current fragment
collision.IDs：IDS共享相同的当前片段分子量的其他碎片
CG.collisions: Number of CG-containing fragments that share the same molecular weight as the current fragment
CG.collisions：企业管治中的片段，共享当前片段相同分子量的数量
CG.collision.IDs: IDs of other CG-containing fragments that share the same molecular weight as the current fragment
CG.collision.IDs：ID的其他企业管治中的片段，共享相同的当前片段的分子量
type: Specifies either 'T' or 'C' cleavage reaction
type：指定“T”或“C”裂解反应
direction: DNA strand used for fragment sequence (can be '+' or '-')
direction：用于片段序列的DNA链（可以是+或 - ）
extra: One of "5PPP-3P", "5OH", or "5PPP-3OH" (default)
extra：一个的“5PPP-3P”，“5OH”，或“-3OH 5PPP”（默认）
bisulfite.converted: Logical indicating whether the fragment sequence represents bisulfite converted sequence
bisulfite.converted：逻辑片段序列是否代表亚硫酸氢转换序列
assayable: Logical indicating whether or not the fragment molecular weight is within the usable mass window
assayable：逻辑与否片段分子量是可用的质量窗口内
conversion.control: Logical indicating whether or not the fragment is designated as a potential conversion control
conversion.control：逻辑与否的片段被指定作为一个潜在的转换控制
required: Logical indicating whether or not the fragment is designated as 'required' by the user
required：逻辑表明用户是否被指定为“必需的”片段
ignored: Logical indicating whether or not the fragment is to be ignored
ignored：逻辑与否的片段是被忽略
primer: Logical indicating whether or not the fragment overlaps with primer or tagged sequence
primer：逻辑指示是否与底漆或标签的序列片段重叠
方法----------Methods----------
\$ signature(x = "MassArrayFragment"): ...
\ $signature(x = "MassArrayFragment")...
\$<- signature(x = "MassArrayFragment"): ...
\ $ < - signature(x = "MassArrayFragment")：...
initialize signature(.Object = "MassArrayFragment"): ...
初始化signature(.Object = "MassArrayFragment")...
作者（S）----------Author(s)----------
Reid F. Thompson (<a href="mailto:rthompso@aecom.yu.edu">rthompso@aecom.yu.edu</a>), John M. Greally (<a href="mailto:jgreally@aecom.yu.edu">jgreally@aecom.yu.edu</a>)
参见----------See Also----------
See Also MassArrayData
另见MassArrayData
举例----------Examples----------
showClass("MassArrayFragment")
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-26 00:28:39
