compareGeneLists(goProfiles)
compareGeneLists()所属R语言包：goProfiles
Compares two lists of genes by building (expanded) profiles and comparing them
比较两个基因名单由建设（扩大）型材和比较
译者：生物统计家园网 机器人LoveR
描述----------Description----------
This function wraps all the needed steps to compare two lists of genes following the methodology developed by Sanchez, Salicru and Ocan\~a (2007)
此功能包装的需要的所有步骤后，桑切斯，Salicru和海洋和沿海区域网\~一（2007）开发的方法来比较两个基因名单
用法----------Usage----------
compareGeneLists(genelist1, genelist2, idType = "Entrez", onto = "ANY",
level = 2, orgPackage,
method = "lcombChisq", ab.approx = "asymptotic", confidence = 0.95, compareFunction="compareGOProfiles", ...)
参数----------Arguments----------
参数：genelist1
First gene set to be compared
第一个基因组进行比较
参数：genelist2
Second gene set to be compared
第二个基因进行比较
参数：idType
Type of identifiers for the genes. May be 'Entrez' (default), BiocProbes or GoTermsFrame. See the 'Details' section below
基因标识的类型。可能是“Entrez的”（默认），BiocProbes或GoTermsFrame。见“详细资料”一节
参数：onto
Ontology on which the profile has to be built
本体论上的配置文件有兴建
参数：level
Level of the ontology at which the profile has to be built
在配置文件建立本体的水平
参数：orgPackage
Name of a Bioconductor's organism annotations package ('org.Xx-eg-db')
1 Bioconductor的有机体注解包（org.Xx-EG-DB“的名称）
参数：method
The approximation method to the sampling distribution under the null hypothesis specifying that the samples pn and qm come from the same population. See the 'Details' section below
下空假设指定的样品PN和QM相同人口抽样分布近似方法。见“详细资料”一节
参数：confidence
The confidence level of the confidence interval in the result
在结果的置信区间的置信水平
参数：ab.approx
The approximation used for computing 'a' and 'b' coefficients (see details)
逼近用于计算a和B系数（见详情）
参数：compareFunction
Allows to use 'fitGOProfile' (sample vs population) or 'compareGOProfiles' (sample1 vs sample2)
允许使用“fitGOProfile”（样本与人口）或“compareGOProfiles（SAMPLE1比的sample2）
参数：...
Other arguments for the methods 'basicProfile' or 'compareGoProfiles'
其他参数的方法basicProfile或compareGoProfiles
值----------Value----------
The result of the comparison is a list with a variable number of arguments, depending for which ontologies has been performed the comparison. Each list member is an object of class 'htest' corresponding to the output of the function compareGOProfiles
比较的结果是一个可变数目的参数列表，根据其中本体已进行比较。每个列表成员是类的htest“的对象，相应输出功能compareGOProfiles
作者（S）----------Author(s)----------
Alex Sanchez
参考文献----------References----------
Statistical methods for the analysis of high-throughput data based on functional profiles derived from the gene ontology.
参见----------See Also----------
compareGOProfiles, basicProfile
compareGOProfiles，basicProfile
举例----------Examples----------
data(prostateIds)
prostateCompared<- compareGeneLists (welsh01EntrezIDs[1:500],
singh01EntrezIDs[1:500], level=2, onto='MF', orgPackage="org.Hs.eg.db")
print(prostateCompared)
# print(compSummary(prostateCompared))[打印（compSummary（prostateCompared））]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 20:47:54
