getServerProbeIntensities(GeneRegionScan)
getServerProbeIntensities()所属R语言包：GeneRegionScan
Get Probe Intensities from a server
从服务器获取探针强度
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Wrapper around getLocalProbeIntensities that is designed to be run easily on remote computers.
包装周围getLocalProbeIntensities设计很容易被远程计算机上运行。
用法----------Usage----------
参数----------Arguments----------
参数：listOfProbesets
Either a character vector with the names of the probesets from which probes should be included in the ProbeLevelSet, or the path name of a file containing this
无论是从探针应列入ProbeLevelSet的probesets的名称的字符向量，或一个包含这个文件的路径名称
参数：celfilePath
The path to a folder that contains the cel files of interest. If serveradress is different from "localhost", this should be the path on the remote computer
到一个文件夹，其中包含利息CEL文件的路径。如果serveradress是从“localhost”的不同，这应该是远程计算机上的路径
参数：annotation
Character string specifying which type of arrays is investigated. If a pgf file and clf file is specified this is optional.
字符串指定调查的是哪种类型的数组。如果一个PGF文件和指定CLF文件，这是可选的。
参数：aptCelExtractPath
The path to the apt-cel-extract file from the Affymetrix Power Tools package (including the filename itself). You can try to leave it as NULL and see what happens. If the tool is in path, it will work anyway. If you have specified the argument before it will be remembered. If you are using an OS for which executables have been included in the package (win32 and linux64), it will default to using that.
从Affymetrix公司的电动工具包（包括文件名本身）的apt-CEL提取文件的路径。你可以尝试离开它为NULL，并看看会发生什么。如果刀具路径是，它无论如何都会正常工作。如果你已经指定的参数，然后将记住它。如果您使用的是其中的可执行文件已包含在包（WIN32与Linux64）的操作系统，它会默认使用的。
参数：pgfPath
The path to a pgf file for the exon array of interest. This argument is mutually exclusive with the cdfPath argument. These files can be downloaded from www.affymetrix.com for the array of interest. Once given for a particular annotation, the location is saved for future use and can be given as NULL next time.
为利益的外显子阵列的PGF文件的路径。这种说法是与cdfPath参数互相排斥的。这些文件可以下载从www.affymetrix.com的阵列利益。一旦给定一个特定的注解，以供将来使用保存的位置，并可以为NULL下一次。
参数：clfPath
The path to a clf file for the exon array of interest. This argument is mutually exclusive with the cdfPath argument. These files can be downloaded from www.affymetrix.com for the array of interest. Once given for a particular annotation, the location is saved for future use and can be given as NULL next time.
clf文件的利息外显子阵列的路径。这种说法是与cdfPath参数互相排斥的。这些文件可以下载从www.affymetrix.com的阵列利益。一旦给定一个特定的注解，以供将来使用保存的位置，并可以为NULL下一次。
参数：cdfPath
The path to a cdf file for the array of interest. This argument is mutually exclusive with the pgfPath and clfPath arguments. These files can be downloaded from www.affymetrix.com for the array of interest. Once given for a particular annotation, the location is saved for future use and can be given as NULL next time.
CDF文件的路径为阵列的利益。这种说法是与pgfPath和clfPath参数相互排斥。这些文件可以下载从www.affymetrix.com的阵列利益。一旦给定一个特定的注解，以供将来使用保存的位置，并可以为NULL下一次。
参数：serveradress
Character string with the IP adress to a remote server. Defaults to "localhost", in which case the algorithm is run locally.
到远程服务器的IP地址的字符串。默认为“localhost”，在这种情况下，该算法是在本地运行。
参数：username
The username for the remote server. Optional if serveradress is "localhost".
远程服务器的用户名。可选的，如果，serveradress是“localhost”。
参数：password
The password for the remote server. Optional if serveradress is "localhost".
远程服务器的密码。可选的，如果，serveradress是“localhost”。
参数：plinkPath
The path to the plink program. Can be found at http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html. Used to transfer commands to the remote server. Optional if serveradress is "localhost".
砰砰程序的路径。可以发现在http://www.chiark.greenend.org.uk/~sgtatham /腻子/ download.html。用来传输到远程服务器的命令。可选的，如果，serveradress是“localhost”。
参数：pscpPath
The path to the pscp program. Can be found at http://www.chiark.greenend.org.uk/~sgtatham/putty/download.html. Used to transfer commands to the remote server. Optional if serveradress is "localhost".
PSCP程序的路径。可以发现在http://www.chiark.greenend.org.uk/~sgtatham /腻子/ download.html。用来传输到远程服务器的命令。可选的，如果，serveradress是“localhost”。
参数：verbose
TRUE or FALSE.
TRUE或FALSE。
Details
详情----------Details----------
This function is a wrapper around getLocalProbeIntensities. The main function of the getServerProbeIntensities function is to save all the data needed to start a getLocalProbeIntensities run, send it to a remote server, start the run, and return the data.
此功能是周围getLocalProbeIntensities包装。的的getServerProbeIntensities函数的主要功能是保存所需要的所有数据，开始getLocalProbeIntensities运行，它发送到远程服务器，启动运行，并返回数据。
值----------Value----------
A ProbeLevelSet with probe quantiles normalized intensity values for all probes in the specified probesets. The ProbeLevelSet inherits the ExpressionSet, but in addition it has the sequence of each probe stored in the featureData of the set.
与探针ProbeLevelSet位数归为在指定probesets的所有探针的强度值。 ProbeLevelSet继承的ExpressionSet，但除了在集featureData存储每个探针的序列。
作者（S）----------Author(s)----------
Lasse Folkersen
参见----------See Also----------
getLocalProbeIntensities, plotOnGene
getLocalProbeIntensities，plotOnGene
举例----------Examples----------
## Not run: [＃无法运行：]
#must correct paths, username and password before this example will work[必须正确的路径，用户名和密码，在此之前的例子将工作]
listOfProbesets<-c("10321_at")
celfilePath<-path_to_some_cel_files #remote[远程]
aptCelExtractPath<-"~/apt/apt-cel-extract" #remote[远程]
cdfPath<-"~/hgu133plus2.cdf" #remote[远程]
username<-"user1"
password<-"ZaphodBeeblebrox"
plinkPath<-"~/plink" #local[当地]
pscpPath<-"~/pscp" #local[当地]
getServerProbeIntensities(listOfProbesets, celfilePath, annotation="hgu133plus2", aptCelExtractPath=aptCelExtractPath, cdfPath=cdfPath,
username=username, password=password, plinkPath=plinkPath, pscpPath=pscpPath)
## End(Not run)[＃结束（不运行）]
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
|
发表于 2012-2-25 18:59:06
