Makesense(geneplotter)
Makesense()所属R语言包：geneplotter
Produce Smoothed Sense/Anti-sense For All Chromosomes
对于所有染色体产生平滑感/反义
译者：生物统计家园网 机器人LoveR
描述----------Description----------
'Makesense' takes either an ExpressionSet object or a matrix of gene expressions and will produce a smoothed positive and negative strands for all chromosomes.
“Makesense需要ExpressionSet对象或matrix基因表达的，会产生一个平滑的正面和负面的所有染色体股。
用法----------Usage----------
Makesense(expr, lib, ...)
参数----------Arguments----------
参数：expr
Either an ExpressionSet or a matrix of gene expressions with genes as rows and columns as samples.
要么是ExpressionSet或matrix基因表达的基因作为样本的行和列。
参数：lib
The name of the Bioconductor annotation data package that will be used to provide mappings from probes to chromosomal locations, such as hgu95av2.db or hgu133a.db. If expr is an ExpressionSet, the argument defaults to the annotation slot of the ExpressionSet.
Bioconductor注释数据包将被用来提供从探针染色体的位置，如hgu95av2.db或hgu133a.db，映射的名称。如果expr的ExpressionSet，参数默认为annotationExpressionSet插槽。
参数：...
Currently, the only optional argument is f, the smoother span to be passed to 'lowess'. Its value should be in the interval of (0,1). This gives the proportion of points in the plot which influence the smooth at each value. Larger values give more smoothness. The default value for this argument is 1/10.
目前，唯一可选的参数是f，平滑的跨度要传递给“LOWESS。它的价值应该在区间（0,1）。这给积点在每个值的影响顺利的比例。值越大，给更多的平滑。此参数的默认值是1/10。
Details
详情----------Details----------
The expr argument can either be of class ExpressionSet or matrix, where the latter represents the matrix of gene expressions.
expr参数可以是类ExpressionSet或matrix，而后者代表了基因表达的矩阵。
If the expr argument is an ExpressionSet, the lib argument will use the annotation slot. Users can override this behaviour and supply their own lib argument if they wish. If the ExpressionSet has no value associated with the annotation slot (which should not happen, but is possible) then the user must supply the lib argument manually or the function will throw an error.
如果expr参数是一个ExpressionSet，lib参数将使用annotation插槽。用户可以重写此行为，如果他们愿意提供自己的lib参数。如果ExpressionSetannotation插槽没有相关的值（这不应该发生，但有可能），那么用户必须提供手动lib参数或功能会抛出一个错误。
值----------Value----------
A list of 2 components:
2组件的列表：
参数：ans2
a list, whose components correspond to samples in the same order as appearing in the columns of 'expr'. Each component is also a list, named by chromosomes "1"-"22", "X" and "Y". Each named component is again a list with two elements named "posS" and "negS", corresponding to the positive and negative strands of a chromosome, each of which is an object returned by 'lowess'.
list，其成分是expr列中出现的顺序相同的样本。每个组件也是list，由染色体“1”命名 - “22”，“X”和“Y”型。每个命名的组件是一个名为“POSS”和“negS”两个元素，对应染色体的正面和负面的股list与再次，每个LOWESS“返回一个对象。
参数：lib
A string giving the name of the annotation data package to use. Optional if expr is an ExpressionSet.
一个字符串，给出注释的数据包使用的名称。可选的，如果expr是ExpressionSet。
作者（S）----------Author(s)----------
Robert Gentleman and Xiaochun Li
参见----------See Also----------
plotChr
plotChr
举例----------Examples----------
if (require("hgu133a.db")) {
data(expressionSet133a)
esetobj <- Makesense(exprs(expressionSet133a), "hgu133a")
esetobj2 <- Makesense(expressionSet133a[1:200, ])
}
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
注2：由于是机器人自动翻译，难免有不准确之处，使用时仔细对照中、英文内容进行反复理解，可以帮助R语言的学习。
注3：如遇到不准确之处，请在本贴的后面进行回帖，我们会逐渐进行修订。
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发表于 2012-2-25 18:55:57
