GatingSet-class(flowWorkspace)
GatingSet-class()所属R语言包：flowWorkspace
Class "GatingSet"
类“GatingSet”
译者：生物统计家园网 机器人LoveR
描述----------Description----------
Class that holds a set of GatingHierarchy objects, representing a set of samples and the gating scheme associated with each.
GatingHierarchy对象代表一组样品，并计划每个门，拥有集类。
类的对象----------Objects from the Class----------
Objects can be created by a call to parseWorkspace(). The annotated data frame can be populated with the keywords from each sample.
对象可以创建一个parseWorkspace（）的调用。可以从每个样品中的关键字填入注释的数据框。
描述----------Description----------
Objects store a collection of GatingHierarchies and represent a group in a flowJo workspace.
对象存储的GatingHierarchies集合和代表一群在flowJo工作区。
插槽----------Slots----------
set: Object of class "list". A list of GatingHierarchy objects
set类"list"的对象。 GatingHierarchy对象名单
metadata: Object of class "AnnotatedDataFrame". Stores the metadata associated with this set of FCS samples.
metadata类"AnnotatedDataFrame"的对象。存储FCS的样本集与此关联的元数据。
方法----------Methods----------
[ signature(x = "GatingSet", i = "ANY"): Subset a GatingSet using the familiar bracket notation
[signature(x = "GatingSet", i = "ANY")：一个子集GatingSet使用熟悉的括号
[<- signature(x = "GatingSet", i = "ANY", j = "ANY", value = "GatingSet"): Replace elements of a GatingSet.
[< - signature(x = "GatingSet", i = "ANY", j = "ANY", value = "GatingSet")：一个GatingSet替换元素。
[[ signature(x = "GatingSet", i = "ANY"): Extract a GatingHierarchy from a GatingSet
[signature(x = "GatingSet", i = "ANY")：提取GatingSet GatingHierarchy
[[<- signature(x = "GatingSet", i = "ANY", j = "ANY", value = "GatingHierarchy"): Replace a GatingHierarchy in a GatingSet
[< - signature(x = "GatingSet", i = "ANY", j = "ANY", value = "GatingHierarchy")：在GatingSet替换1 GatingHierarchy
flowWorkspace2flowCore signature(obj = "GatingSet"): Convert a GatingSet to a single workflow (if they have a common set of gates) or list of workflows if the GatingHierarchies differ.
flowWorkspace2flowCoresignature(obj = "GatingSet")：转换到一个单一的工作流程（如果他们有一个共同的门）或工作流程列表GatingSet如果GatingHierarchies不同。
getData signature(obj = "GatingSet"): Return a flowSet for the GatingSet
getData方法signature(obj = "GatingSet")：返回一个为GatingSet flowSet
getGate signature(obj = "GatingSet", y = "numeric"): Return a flowSet for a subpopulation of each GatingHierarchy, numerically indexed.
getGatesignature(obj = "GatingSet", y = "numeric")：返回一个亚群为每个GatingHierarchy的flowSet，数字索引。
getKeywords signature(obj = "GatingSet", y = "character"): Get the keywords associated with sample y
getKeywordssignature(obj = "GatingSet", y = "character")：获取样本Ÿ相关的关键字
getKeywords signature(obj = "GatingSet", y = "numeric"): Get the keywords associated with sample y, numerical index.
getKeywordssignature(obj = "GatingSet", y = "numeric")：获取样本Y，数值索引相关的关键字。
getSamples signature(x = "GatingSet"): Get the sample names of the GatingHierarchies in this GatingSet
getSamplessignature(x = "GatingSet")：在此GatingSet GatingHierarchies样本名
keyword signature(object = "GatingSet", keyword = "character"): Get the specific keyword for all samples in this GatingSet.
关键字signature(object = "GatingSet", keyword = "character")：为在此GatingSet所有样品的特定关键字。
lapply signature(X = "GatingSet"): lapply method for GatingSet
lapplysignature(X = "GatingSet")：为GatingSet lapply的方法
length signature(x = "GatingSet"): Return the length of the GatingSet, number of GatingHierarhcy objects
长度signature(x = "GatingSet")：返回的GatingSet的长度，对GatingHierarhcy对象数量
plotPopCV signature(x = "GatingSet"): plot the population coefficients of variation between flowJo and flowCore for all populations and all samples
plotPopCVsignature(x = "GatingSet")：积人口系数之间flowJo和flowCore所有人群和所有样品的变化
show signature(object = "GatingSet"): Print information about the GatingSet.
显示signature(object = "GatingSet")：有关GatingSet打印信息。
作者（S）----------Author(s)----------
Greg Finak <gfinak@fhcrc.org>
参考文献----------References----------
参见----------See Also----------
AnnotatedDataFrame GatingHierarchy flowJoWorkspace
AnnotatedDataFrameGatingHierarchyflowJoWorkspace
举例----------Examples----------
require(flowWorkspaceData)
d<-system.file("extdata",package="flowWorkspaceData")
wsfile<-list.files(d,pattern="A2004Analysis.xml",full=TRUE)
ws <- openWorkspace(wsfile);
G<-try(parseWorkspace(ws,execute=TRUE,path=d,name=1));
plotPopCV(G[[1]]);
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注：
注1：为了方便大家学习，本文档为生物统计家园网机器人LoveR翻译而成，仅供个人R语言学习参考使用，生物统计家园保留版权。
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发表于 2012-2-25 18:16:19
