flowJoWorkspace-class(flowWorkspace)
flowJoWorkspace-class()所属R语言包:flowWorkspace
Class "flowJoWorkspace"
类“flowJoWorkspace”
译者:生物统计家园网 机器人LoveR
描述----------Description----------
An R representation of a flowJo workspace.
ř一个flowJo工作区的代表。
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("flowJoWorkspace.xml", ...).
创建对象可以通过检测的形式new("flowJoWorkspace.xml", ...)。
插槽----------Slots----------
version: Object of class "character". The version of the XML workspace.
version类"character"的对象。 XML工作空间的版本。
file: Object of class "character". The file name.
file类"character"的对象。该文件的名称。
.cache: Object of class "environment". An environment for internal use.
.cache类"environment"的对象。供内部使用的环境。
path: Object of class "character". The path to the file.
path类"character"的对象。该文件的路径。
doc: Object of class "XMLInternalDocument". The XML document object.
doc类"XMLInternalDocument"的对象。 XML文档对象。
方法----------Methods----------
closeWorkspace signature(workspace = "flowJoWorkspace"): Close the workspace file and delete the C representation of the XML document, freeing memory.
closeWorkspacesignature(workspace = "flowJoWorkspace"):关闭工作区文件和删除XML文档的Ç表示,释放内存。
flowWorkspace2flowCore signature(obj = "flowJoWorkspace"): Convert a flowJo workspace to a flowCore workflow
flowWorkspace2flowCoresignature(obj = "flowJoWorkspace"):转换flowJo工作区到flowCore工作流程
getCompensationMatrices signature(x = "flowJoWorkspace"): Retrieve the compensation matrices in the flowJo workspace.
getCompensationMatricessignature(x = "flowJoWorkspace"):找回在flowJo工作区补偿矩阵。
getKeywords signature(obj = "flowJoWorkspace", y = "character"): Get the keywords for sample y from the flowJo workspace
getKeywordssignature(obj = "flowJoWorkspace", y = "character"):获取样品Ÿ关键字从flowJo工作区,
getSampleGroups signature(x = "flowJoWorkspace"): Get the sample groups defined in the flowJo workspace.
getSampleGroupssignature(x = "flowJoWorkspace"):获取样品在flowJo工作区中定义的组。
getSamples signature(x = "flowJoWorkspace"): Get the samples listed in the flowJo workspace.
getSamplessignature(x = "flowJoWorkspace"):在flowJo工作区中列出的样本。
getTransformations signature(x = "flowJoWorkspace"): Get the data transformations listed in the flowJo workspace
getTransformationssignature(x = "flowJoWorkspace"):获取上市在flowJo工作区的数据转换
parseWorkspace signature(obj = "flowJoWorkspace"): Parse a workspace, creating a GatingSet.
parseWorkspacesignature(obj = "flowJoWorkspace"):解析一个工作区,创建一个GatingSet。
show signature(object = "flowJoWorkspace"): Print information about a workspace
显示signature(object = "flowJoWorkspace"):有关工作区的打印信息
summary signature(object = "flowJoWorkspace"): Summarize
摘要signature(object = "flowJoWorkspace"):总结
作者(S)----------Author(s)----------
Greg Finak <gfinak@fhcrc.org>
参考文献----------References----------
参见----------See Also----------
GatingSet GatingHierarchy
GatingSetGatingHierarchy
举例----------Examples----------
require(flowWorkspaceData)
d<-system.file("extdata",package="flowWorkspaceData")
wsfile<-list.files(d,pattern="A2004Analysis.xml",full=TRUE)
ws <- openWorkspace(wsfile);
summary(ws)
getSamples(ws)
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注:
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