R语言 cosmo包 subMotifCon-class()函数中文帮助文档(中英文对照)

loveR

subMotifCon-class(cosmo)
subMotifCon-class()所属R语言包：cosmo

                                        Class "subMotifCon" ~~~
                                         类“subMotifCon”~~~

                                         译者：生物统计家园网 机器人LoveR

描述----------Description----------

This class defines a global constraint when a part of the motif is partially known.
这个类定义部分称为一个全球性的约束，当主题的一部分。


类的对象----------Objects from the Class----------

Objects can be created by calls of the form   new('subMotifCon',<br>     submotif      = ...., # Object of class \code{character}<br>     minfreq       = ...., # Object of class \code{numeric}<br>   ) or by:   makeSubMotifCon(<br>     submotif      = ...., # Object of class \code{character}<br>     minfreq       = ...., # Object of class \code{numeric} indicates the lower bound for the nucleotide frequencies in order for the submotif to be considered as contained within the motif.The nucleotide frequencies are determined from the estinmated position weight matrix.<br>   )
对象可以创建形式  new('subMotifCon',参考    submotif      = ...., # Object of class \code{character}参考    minfreq       = ...., # Object of class \code{numeric}参考  )或检测：  makeSubMotifCon(参考     submotif      = ...., # Object of class \code{character}参考    minfreq       = ...., # Object of class \code{numeric} indicates the lower bound for the nucleotide frequencies in order for the submotif to be considered as contained within the motif.The nucleotide frequencies are determined from the estinmated position weight matrix.参考  )


插槽----------Slots----------




submotif: Object of class "matrix", it is the submotif which is thought to be contained within the motif
submotif：类对象"matrix"，它是被认为是在序所载submotif




minfreq: Object of class "numeric" indicates the lower bound for the nucleotide frequencies in order for the  submotif to be considered as contained within the motif. The nucleotide frequencies are determined from the estinmated position weight matrix.
minfreq："numeric"类对象表示较低被视为在序所载submotif核苷酸频率的约束。从estinmated位置权重矩阵的核苷酸频率确定。


方法----------Methods----------

No methods defined with class "shapeDiffCon" in the signature.
没有任何方法定义类的“shapeDiffCon”签名。


作者（S）----------Author(s)----------



Fabian Gallusser, <a href="mailto:fgallusser@berkeley.edu">fgallusser@berkeley.edu</a>




参见----------See Also----------

shapeCon, shapeDiffCon, posFreqCon, boundCon, palCon makeConSet
shapeCon，shapeDiffCon，posFreqCon，boundCon，palConmakeConSet


举例----------Examples----------


submotifcon=makeSubMotifCon("TATAA", 0.5)

转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。


注：
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