RS-class(CNTools)
RS-class()所属R语言包:CNTools
Class "RS" contains the Reduced Segment data matrix derived
类的“RS”包含的减少分部数据矩阵衍生
译者:生物统计家园网 机器人LoveR
描述----------Description----------
The class contains the Reduced Segment data matrix derived from the output of the segment method of DNACopy and provides functions to manipulate the data or perform other
类包含减少分部从输出的段DNACopy方法得出的数据矩阵和提供的功能来操纵数据或执行其他
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("RS", ...). A constructor RS(rs, by, imput, XY) can also be used to intantiate an object of this class
创建对象可以通过检测的形式new("RS", ...)。构造RS(RS,攀枝花钢铁集团,的XY),也可以用于intantiate这个类的对象
插槽----------Slots----------
rs: Object of class "ANY" eith a matrix if the RS is by region or gene or a list of matrix if the
rs:如果RS是按区域或基因或矩阵列表,如果对象的类"ANY"的eith矩阵
by: Object of class "character" a charactere string indicating how the RS matrix is obtained.
by:Object类的"character"charactere字符串,指示如何获得RS矩阵。
方法----------Methods----------
cor signature(x = "RS"): Calculates the sample wise
心病signature(x = "RS"):计算样本明智
dist signature(x = "RS"): Calculates the distance
区signature(x = "RS"):计算距离
genefilter signature(expr = "RS"): filters features
genefiltersignature(expr = "RS"):过滤器功能
madFilter signature(object = "RS"): filters features
madFiltersignature(object = "RS"):过滤器功能
rs signature(object = "RS"): get method for the by
RSsignature(object = "RS"):为方法
rs<- signature(object = "RS"): assignment method for
RS < - signature(object = "RS"):分配方法
segBy signature(object = "RS"): get method for the by
为segBysignature(object = "RS"):方法
show signature(object = "RS"): show method for an RS
显示signature(object = "RS")show方法:一个RS
作者(S)----------Author(s)----------
Jianhua Zhang
参见----------See Also----------
CNSeg
CNSeg
举例----------Examples----------
data("sampleData")
# take a subset of the data for speed[利用速度数据的一个子集]
seg <- CNSeg(sampleData[which(is.element(sampleData[, "ID"], sample(unique(sampleData[, "ID"]), 20))), ])
rsByregion <- getRS(seg, by = "region", imput = TRUE, XY = FALSE, what = "median")
rsByregion
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注:
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