CNSeg-class(CNTools)
CNSeg-class()所属R语言包:CNTools
Class "CNSeg" contains the output of DNACopy segmentation data
类“CNSeg”包含的输出DNACopy分割数据
译者:生物统计家园网 机器人LoveR
描述----------Description----------
Segmentation results of copy number data can not be operated by other analysis tools such as classification. The class "CNSeg" provides methods to convert segmentation data into a (what is called Reduced segments (RS))matrix format
拷贝数数据的分割结果不能由其他分析工具,如分类经营。类“CNSeg”(什么叫做减少的分部(RS))矩阵格式转换成分割的数据提供了一些方法
类的对象----------Objects from the Class----------
Objects can be created by calls of the form new("CNSeg",..). A constructor CNSeg(segList) can also be used to instantiate CNSeg object
创建对象可以通过检测的形式new("CNSeg",..)。构造CNSeg(segList)也可用于实例化CNSeg对象
插槽----------Slots----------
segList: Object of class "data.frame" is the "output" element of the object return by the segment
segList:"data.frame"类对象是对象返回的元素的“输出”段
chromosome: Object of class "character" is
chromosome:"character"类的对象
end: Object of class "character" is
end:"character"类的对象
start: Object of class "character" is
start:"character"类的对象
segMean: Object of class "character" is
segMean:"character"类的对象
id: Object of class "character" is
id:"character"类的对象
方法----------Methods----------
getRS signature(object = "CNSeg"): get the
getRSsignature(object = "CNSeg"):得到
segList signature(object = "CNSeg"): get the
segListsignature(object = "CNSeg")得到
segList<- signature(object = "CNSeg"): set the
segList < - signature(object = "CNSeg"):设置
show signature(object = "CNSeg"): print a CNSeg
显示signature(object = "CNSeg"):打印CNSeg
作者(S)----------Author(s)----------
Jianhua Zhang
参考文献----------References----------
<h3>See Also</h3> <code>RS</code>
举例----------Examples----------
data("sampleData")
# take a subset of the data for speed[利用速度数据的一个子集]
seg <- CNSeg(sampleData[which(is.element(sampleData[, "ID"],
sample(unique(sampleData[, "ID"]), 10))), ])
rsBypair <- getRS(seg, by = "pair", imput = FALSE, XY = FALSE, what = "mean")
rsBypair
转载请注明:出自 生物统计家园网(http://www.biostatistic.net)。
注:
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